Rw2G002400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003259
Physical Location & Seq
Forward (+)
1973173 .. 1975078
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002400.1

Sequence Viewer

Length: 1128 bp
ATGTCTTGGCTCTTCACCTCTCTCCAACCCGACGCGGAAAACGACGCGTCGTTTCTCGGCCAAACCCTCACCCGCCAACTCCGCGGCGTCGCCACCTTCCTCGCTCCGCCGCCCTCCTCCTCCAAGTCCCTTCCCTCCTCCGATTGTCCACCGCCGTCGCCGTCGCCGGCTCTCTTGGGAGTCCGAAACGATCTCGCGGAATTGGGCGGGAGCTTAAAGACCGGCCTCTCGCTTCTCTCCGTCGCCGGAATCTCCAAATTGGCTTCGAACTTGCTCCCGGTTGGGAACGGAGCTCCGGAAGACGACGGCGGCGGCGGTCCCGTGCCGGGGATTACCGATGAGATTGTCGGCTTCGTCGCTCAGATTTCGAAGCTTCCGGACTGTTGGACCGGCTTTCCTATACCACTGGACCACCATGATTTTAGCATGTCCAATGCTCAGAGAGAACATGCCTCCACTGTCGAACAATTGGTTCCGGGGTTTGCTGATCTAAGAGTCAGAGTTTGCAGTTCGATGAGTGAGGAGCAATTTTGGATGATCTATTTCTTGTTACTGCTTCCAAGACTAAATGCAGATGATTTTGAGCTTCTGTCAACCCCCAAGATTGTTGAAGCAAGAAATGTACTTCTGCACAAGCTTCAAAAGAACACGCAGGTATCCACCTCTGAGGAGTCAACTCTTCATTCAACTGAAAAGGACACCCAGGTTGAGAAGACACAAGGGGGAGAATTCTCCTCTGCAGAAAAGAAAGATCTGACAGAGATTGTAAATACAGCTGACAGGTTAAGAATTGACGATGAAGAGAGCACTGAGCAATGGTCCGAAGCAGCGAGCATTAGTTCTGGTACTTTTGTGGATGACCCAAAAAAACTTGAACATGATGACGATATCTCATTCAGCGATTTAGAGGATGACGAGAATGACATTTCTACTAGATCGTCAGGCCTAAGGCCAGTAAAGGACGTTAGGGAATGTTCACCCAGTGGATCAAATCATTCAAATGACTGGATTCGGCTGAATAGAAGTGCTGCGATTGATGGTGGCCATCAAAGGACTGGTACATCGAAAGAGAAAGATTCAGAAGGTGAGGAGTCGAATGACTGGCTCACTGTAGATAAGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

375

Amino Acids

40.8

Weight (kDa)

4.53

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 140 - 190 5.1e-07 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccII CGCG 4 cut(s) 35, 47, 84, 197
AccIII TCCGGA 2 cut(s) 295, 376
AclWI GGATC 1 cut(s) 994
AcoI YGGCCR 2 cut(s) 58, 1042
AcsI RAATTY 1 cut(s) 728
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 983
AfaI GTAC 3 cut(s) 624, 847, 1060
AfiI CCNNNNNNNGG 2 cut(s) 326, 327
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 5 cut(s) 611, 641, 687, 875, 999
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 6 cut(s) 213, 293, 373, 586, 637, 776
AluI AGCT 6 cut(s) 213, 293, 373, 586, 637, 776
Alw21I GWGCWC 2 cut(s) 295, 809
AlwI GGATC 1 cut(s) 994
Aor13HI TCCGGA 2 cut(s) 295, 376
AoxI GGCC 5 cut(s) 58, 223, 943, 950, 1042
ApeKI GCWGC 2 cut(s) 827, 1028
ApoI RAATTY 1 cut(s) 728
AspS9I GGNCC 4 cut(s) 317, 387, 409, 819
AsuC2I CCSGG 3 cut(s) 278, 327, 477
AsuHPI GGTGA 4 cut(s) 7, 61, 969, 1097
AsuII TTCGAA 2 cut(s) 266, 368
AvaII GGWCC 4 cut(s) 317, 387, 409, 819
AxyI CCTNAGG 1 cut(s) 947
BaeI ACNNNNGTAYC 4 cut(s) 639, 672, 837, 870
BalI TGGCCA 1 cut(s) 1044
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 306, 719
Bbv12I GWGCWC 2 cut(s) 295, 809
BbvI GCAGC 2 cut(s) 839, 1015
BccI CCATC 2 cut(s) 1031, 1053
BceAI ACGGC 3 cut(s) 139, 145, 322
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 667
BcnI CCSGG 3 cut(s) 278, 327, 477
BfaI CTAG 1 cut(s) 933
BfmI CTRYAG 2 cut(s) 738, 1110
BfuAI ACCTGC 1 cut(s) 643
BfuI GTATCC 1 cut(s) 667
BglII AGATCT 1 cut(s) 751
BisI GCNGC 6 cut(s) 85, 110, 310, 313, 828, 1029
BlsI GCNGC 6 cut(s) 86, 111, 311, 314, 829, 1030
Bme1390I CCNGG 4 cut(s) 278, 327, 477, 704
Bme18I GGWCC 4 cut(s) 317, 387, 409, 819
BmgT120I GGNCC 4 cut(s) 317, 387, 409, 819
BmiI GGNNCC 2 cut(s) 319, 474
BmrFI CCNGG 4 cut(s) 278, 327, 477, 704
BmrI ACTGGG 1 cut(s) 975
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 2 cut(s) 306, 719
Bpu14I TTCGAA 2 cut(s) 266, 368
BpuMI CCSGG 3 cut(s) 278, 327, 477
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 82, 326, 476, 702
BsaWI WCCGGW 2 cut(s) 295, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 327
Bse118I RCCGGY 3 cut(s) 166, 221, 389
Bse1I ACTGG 6 cut(s) 411, 953, 981, 1010, 1060, 1106
Bse21I CCTNAGG 1 cut(s) 947
Bse3DI GCAATG 1 cut(s) 821
BseAI TCCGGA 2 cut(s) 295, 376
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 4 cut(s) 82, 326, 476, 702
BseGI GGATG 3 cut(s) 540, 862, 916
BseLI CCNNNNNNNGG 2 cut(s) 326, 327
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 4 cut(s) 374, 452, 657, 801
BseNI ACTGG 6 cut(s) 411, 953, 981, 1010, 1060, 1106
BseRI GAGGAG 7 cut(s) 106, 109, 127, 536, 683, 724, 1103
BseXI GCAGC 2 cut(s) 839, 1015
BsgI GTGCAG 1 cut(s) 614
Bsh1236I CGCG 4 cut(s) 35, 47, 84, 197
BshFI GGCC 5 cut(s) 60, 225, 945, 952, 1044
BsiHKAI GWGCWC 2 cut(s) 295, 809
BsiSI CCGG 9 cut(s) 167, 222, 246, 278, 296, 326, 377, 390, 476
BslFI GGGAC 2 cut(s) 112, 303
BslI CCNNNNNNNGG 2 cut(s) 326, 327
BsmFI GGGAC 2 cut(s) 112, 303
BsnI GGCC 5 cut(s) 60, 225, 945, 952, 1044
Bsp119I TTCGAA 2 cut(s) 266, 368
Bsp1286I GDGCHC 2 cut(s) 295, 809
Bsp13I TCCGGA 2 cut(s) 295, 376
Bsp143I GATC 6 cut(s) 190, 487, 537, 751, 935, 986
BspANI GGCC 5 cut(s) 60, 225, 945, 952, 1044
BspCNI CTCAG 4 cut(s) 373, 451, 658, 802
BspEI TCCGGA 2 cut(s) 295, 376
BspFNI CGCG 4 cut(s) 35, 47, 84, 197
BspLI GGNNCC 2 cut(s) 319, 474
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 1 cut(s) 994
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 2 cut(s) 266, 368
BsrDI GCAATG 1 cut(s) 821
BsrFI RCCGGY 3 cut(s) 166, 221, 389
BsrI ACTGG 6 cut(s) 411, 953, 981, 1010, 1060, 1106
BssAI RCCGGY 3 cut(s) 166, 221, 389
BssECI CCNNGG 4 cut(s) 82, 326, 476, 702
BssMI GATC 6 cut(s) 190, 487, 537, 751, 935, 986
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 3 cut(s) 383, 460, 1111
Bst6I CTCTTC 3 cut(s) 17, 684, 795
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 2 cut(s) 266, 368
BstC8I GCNNGC 2 cut(s) 168, 832
BstDEI CTNAG 6 cut(s) 360, 438, 491, 666, 810, 947
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 3 cut(s) 540, 862, 916
BstFNI CGCG 4 cut(s) 35, 47, 84, 197
BstKTI GATC 6 cut(s) 193, 490, 540, 754, 938, 989
BstMBI GATC 6 cut(s) 190, 487, 537, 751, 935, 986
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 2 cut(s) 430, 452
BstSCI CCNGG 4 cut(s) 276, 325, 475, 702
BstSFI CTRYAG 2 cut(s) 738, 1110
BstUI CGCG 4 cut(s) 35, 47, 84, 197
BstV1I GCAGC 2 cut(s) 839, 1015
BstV2I GAAGAC 2 cut(s) 306, 719
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 947
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 5 cut(s) 60, 225, 945, 952, 1044
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 3 cut(s) 540, 862, 916
BtsIMutI CAGTG 5 cut(s) 404, 456, 807, 988, 1107
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 168, 832
Cfr10I RCCGGY 3 cut(s) 166, 221, 389
Cfr13I GGNCC 4 cut(s) 317, 387, 409, 819
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 4 cut(s) 36, 41, 53, 76
Csp6I GTAC 3 cut(s) 623, 846, 1059
CviAII CATG 4 cut(s) 416, 427, 449, 878
CviQI GTAC 3 cut(s) 623, 846, 1059
DdeI CTNAG 6 cut(s) 360, 438, 491, 666, 810, 947
DpnI GATC 6 cut(s) 192, 489, 539, 753, 937, 988
DpnII GATC 6 cut(s) 190, 487, 537, 751, 935, 986
DraIII CACNNNGTG 1 cut(s) 983
EaeI YGGCCR 2 cut(s) 58, 1042
Eam1104I CTCTTC 3 cut(s) 17, 684, 795
EarI CTCTTC 3 cut(s) 17, 684, 795
EciI GGCGGA 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 945
Eco24I GRGCYC 1 cut(s) 295
Eco32I GATATC 1 cut(s) 889
Eco47I GGWCC 4 cut(s) 317, 387, 409, 819
Eco53kI GAGCTC 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 947
EcoICRI GAGCTC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 702
EcoRV GATATC 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 4 cut(s) 419, 430, 452, 881
FaiI YATR 5 cut(s) 401, 417, 428, 450, 879
FaqI GGGAC 2 cut(s) 112, 303
FatI CATG 4 cut(s) 415, 426, 448, 877
FauI CCCGC 2 cut(s) 80, 200
Fnu4HI GCNGC 6 cut(s) 85, 110, 310, 313, 828, 1029
FokI GGATG 3 cut(s) 547, 869, 923
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 6 cut(s) 85, 110, 310, 313, 828, 1029
FspBI CTAG 1 cut(s) 933
GluI GCNGC 6 cut(s) 85, 110, 310, 313, 828, 1029
HaeIII GGCC 5 cut(s) 60, 225, 945, 952, 1044
HapII CCGG 9 cut(s) 167, 222, 246, 278, 296, 326, 377, 390, 476
HgaI GACGC 4 cut(s) 36, 41, 53, 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 419, 430, 452, 881
HincII GTYRAC 2 cut(s) 594, 675
HindII GTYRAC 2 cut(s) 594, 675
HindIII AAGCTT 2 cut(s) 371, 635
HinfI GANTC 7 cut(s) 180, 249, 495, 671, 1009, 1076, 1091
HpaII CCGG 9 cut(s) 167, 222, 246, 278, 296, 326, 377, 390, 476
HphI GGTGA 4 cut(s) 7, 61, 969, 1097
Hpy166II GTNNAC 4 cut(s) 149, 594, 675, 977
Hpy188I TCNGA 9 cut(s) 142, 185, 363, 441, 500, 667, 756, 823, 1081
Hpy188III TCNNGA 2 cut(s) 296, 377
Hpy8I GTNNAC 4 cut(s) 149, 594, 675, 977
Hpy99I CGWCG 9 cut(s) 35, 47, 52, 92, 160, 166, 245, 308, 359
HpyAV CCTTC 3 cut(s) 106, 140, 1076
HpyCH4III ACNGT 3 cut(s) 383, 460, 1111
HpyCH4IV ACGT 1 cut(s) 963
HpyCH4V TGCA 4 cut(s) 507, 572, 631, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 6 cut(s) 360, 438, 491, 666, 810, 947
HpySE526I ACGT 1 cut(s) 963
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 419, 430, 452, 881
Kpn2I TCCGGA 2 cut(s) 295, 376
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 6 cut(s) 190, 487, 537, 751, 935, 986
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 6 cut(s) 109, 210, 279, 290, 298, 523
Lsp1109I GCAGC 2 cut(s) 839, 1015
MaeI CTAG 1 cut(s) 933
MaeII ACGT 1 cut(s) 963
MaeIII GTNAC 1 cut(s) 549
MalI GATC 6 cut(s) 192, 489, 539, 753, 937, 988
MboI GATC 6 cut(s) 190, 487, 537, 751, 935, 986
MboII GAAGA 5 cut(s) 4, 311, 671, 724, 812
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 295, 809
MlsI TGGCCA 1 cut(s) 1044
MluCI AATT 6 cut(s) 200, 257, 467, 527, 728, 789
MluI ACGCGT 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 1044
MlyI GAGTC 4 cut(s) 189, 504, 680, 1100
MmeI TCCRAC 2 cut(s) 49, 365
Mox20I TGGCCA 1 cut(s) 1044
MroI TCCGGA 2 cut(s) 295, 376
MroNI GCCGGC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 1044
MseI TTAA 2 cut(s) 215, 785
MslI CAYNNNNRTG 1 cut(s) 999
Msp20I TGGCCA 1 cut(s) 1044
MspA1I CMGCKG 2 cut(s) 84, 776
MspI CCGG 9 cut(s) 167, 222, 246, 278, 296, 326, 377, 390, 476
MspR9I CCNGG 4 cut(s) 278, 327, 477, 704
MunI CAATTG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 704
MvnI CGCG 4 cut(s) 35, 47, 84, 197
MwoI GCNNNNNNNGC 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 3 cut(s) 278, 327, 477
NdeII GATC 6 cut(s) 190, 487, 537, 751, 935, 986
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 4 cut(s) 419, 430, 452, 881
NlaIV GGNNCC 2 cut(s) 319, 474
NmeAIII GCCGAG 1 cut(s) 36
NspI RCATGY 2 cut(s) 430, 452
NspV TTCGAA 2 cut(s) 266, 368
PceI AGGCCT 1 cut(s) 945
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 249, 1009, 1076
PkrI GCNGC 6 cut(s) 86, 111, 311, 314, 829, 1030
PleI GAGTC 4 cut(s) 188, 503, 679, 1099
PpsI GAGTC 4 cut(s) 188, 503, 679, 1099
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 2 cut(s) 319, 474
PspPI GGNCC 4 cut(s) 317, 387, 409, 819
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 624, 847, 1060
RsaNI GTAC 3 cut(s) 623, 846, 1059
RseI CAYNNNNRTG 1 cut(s) 999
SacI GAGCTC 1 cut(s) 295
SacII CCGCGG 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 215, 785
SatI GCNGC 6 cut(s) 85, 110, 310, 313, 828, 1029
Sau3AI GATC 6 cut(s) 190, 487, 537, 751, 935, 986
Sau96I GGNCC 4 cut(s) 317, 387, 409, 819
SchI GAGTC 4 cut(s) 189, 504, 680, 1100
ScrFI CCNGG 4 cut(s) 278, 327, 477, 704
SduI GDGCHC 2 cut(s) 295, 809
SfcI CTRYAG 2 cut(s) 738, 1110
Sfr303I CCGCGG 1 cut(s) 85
SfuI TTCGAA 2 cut(s) 266, 368
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 4 cut(s) 317, 387, 409, 819
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 6 cut(s) 200, 257, 467, 527, 728, 789
SseBI AGGCCT 1 cut(s) 945
SspMI CTAG 1 cut(s) 933
SstI GAGCTC 1 cut(s) 295
StuI AGGCCT 1 cut(s) 945
StyD4I CCNGG 4 cut(s) 276, 325, 475, 702
TaaI ACNGT 3 cut(s) 383, 460, 1111
TaiI ACGT 1 cut(s) 966
TaqI TCGA 6 cut(s) 266, 368, 462, 512, 1064, 1094
TasI AATT 6 cut(s) 200, 257, 467, 527, 728, 789
TatI WGTACW 1 cut(s) 622
TauI GCSGC 4 cut(s) 87, 112, 312, 315
TfiI GAWTC 3 cut(s) 249, 1009, 1076
Tru1I TTAA 2 cut(s) 215, 785
Tru9I TTAA 2 cut(s) 215, 785
TscAI CASTG 5 cut(s) 411, 463, 814, 988, 1114
TseI GCWGC 2 cut(s) 827, 1028
TspDTI ATGAA 2 cut(s) 671, 813
TspGWI ACGGA 2 cut(s) 229, 303
TspRI CASTG 5 cut(s) 411, 463, 814, 988, 1114
VpaK11BI GGWCC 4 cut(s) 317, 387, 409, 819
XapI RAATTY 1 cut(s) 728
XceI RCATGY 2 cut(s) 430, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XspI CTAG 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.