Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Forward (+)

10184756 .. 10186796

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTCTTGGCTCTTCAGCTCTCCCCGCCAACCCGACGACGACCCGCGTGATGTAGAACAACCCAACCAACCGCAAAACGACCTGTCGTTTCTCCGCCAAACCCTCGGCCGCCAAATCCGCGGCGTCGCCACCTTCCTCGCTCCACCTCCATCACCTCCATCACCGCCATCAAACAACGAAGTTCCCTCGTCCAATTCTCTGTCGCAGTCGCAGGCGCTTTTGGGAATCCGGAATGATCTGGTGGAGATCGGCGGGAGCTTCAAGACTGGCCTCTCCCTGCTCTCTACGAACAGCAACAAAGCCGTAACCGAGATCTCCAAGTTCGCATCGAGCTTGCTGCAGCTTCAGAACGAAGCTTTAGAAGAAGGCGGAGACGCTGATGACGACGGCGATGTTGGCGGCGGTCAAGTGCCGGGGATCACGGATGAAGTTCTCGGTTTCGTCGCCGAGATTTCGGTGATGGCGGACTGCTGGATCGACTTTCCTATGACGCTCAATCATGATTTCAGCATGTCGGATGCTCAGAAAGAGCATGCGTCTGCTGTTGAACAATTGGTTCCGGGATTTGCAGATTTAAGAGTCCAGCTTTGCAGTTCCATGAGTGAGGAGCAGTTTTGGATGATCTATTTCTTGTTGCTGCTTCCAAGACTAAATGAACATGATTTTGAGCTTCTATCAACCCCCAAGATTGTTGAAGCAAGAGACGTACTTCTGCACAAACTTCAAAACAAGAGGAACACACAGGAGGATGCCCCAGAGAAGTCAATTCTCGTTTCACCTAAAAGGCACATCCAGGATGGGAAGACACGAGGGGAGGAAGTCTCATCTCAAGAGAAGGAAGCCTTGACTGAGATAGTTAACATGGCAGAAAGGTTAAAGACCGATGACGAAGAGGGCACTGAGCAGTGGTCTGAAGGGGCAAGTATTAGTTCTGGCACTTTAGTGGATGGCCAAAGAAAACATGAACCTGAAGACGATATCTCATTCAGCGATTTAGAGGACGAAGAGAATGACCTTTCTAGCAGACAGTCAGGACTAAGGCAAGGACGGGATGCCAGGGCATGTTCACCTAGTGGATCAAATGACTGGGTTCAGCTGAACCGAAGCTCGGAAACTGAGGGTGGCCAGAAAAAGGCTGGTCGGTCAAAAGGGAAAGATTCAGAAGGTGAGGATTCAAGTGACTGGTTTGCGGTAGATGAATATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

403

Amino Acids

44.28

Weight (kDa)

4.42

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	46, 120
AccIII	TCCGGA	1 cut(s)	228
AclWI	GGATC	3 cut(s)	425, 482, 1084
AcoI	YGGCCR	3 cut(s)	106, 949, 1123
AcuI	CTGAAG	3 cut(s)	329, 933, 990
AcyI	GRCGYC	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	1073
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	2 cut(s)	1108, 1132
AgsI	TTSAA	5 cut(s)	262, 548, 695, 725, 1176
AjnI	CCWGG	2 cut(s)	792, 1055
AleI	CACNNNNGTG	1 cut(s)	941
AluBI	AGCT	9 cut(s)	18, 258, 333, 343, 356, 586, 670, 1096, 1107
AluI	AGCT	9 cut(s)	18, 258, 333, 343, 356, 586, 670, 1096, 1107
Alw26I	GTCTC	3 cut(s)	366, 696, 826
AlwI	GGATC	3 cut(s)	425, 482, 1084
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	4 cut(s)	106, 268, 949, 1123
ApeKI	GCWGC	3 cut(s)	337, 340, 637
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	414, 561
AsuHPI	GGTGA	6 cut(s)	144, 153, 469, 768, 1059, 1178
BaeGI	GKGCMC	1 cut(s)	899
BalI	TGGCCA	2 cut(s)	951, 1125
BauI	CACGAG	1 cut(s)	807
BbsI	GAAGAC	2 cut(s)	809, 978
BbvI	GCAGC	3 cut(s)	324, 352, 624
BccI	CCATC	6 cut(s)	157, 166, 175, 454, 791, 941
BceAI	ACGGC	2 cut(s)	287, 403
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	2 cut(s)	794, 1057
BcnI	CCSGG	2 cut(s)	414, 561
BcoDI	GTCTC	3 cut(s)	366, 696, 826
BfaI	CTAG	2 cut(s)	1020, 1071
BfmI	CTRYAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	218
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	6 cut(s)	109, 121, 338, 341, 400, 638
BlsI	GCNGC	6 cut(s)	110, 122, 339, 342, 401, 639
Bme1390I	CCNGG	4 cut(s)	414, 561, 794, 1057
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	4 cut(s)	414, 561, 794, 1057
BmrI	ACTGGG	1 cut(s)	1096
BmsI	GCATC	4 cut(s)	335, 508, 739, 1042
BmuI	ACTGGG	1 cut(s)	1096
BpiI	GAAGAC	2 cut(s)	809, 978
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpuEI	CTTGAG	1 cut(s)	813
BpuMI	CCSGG	2 cut(s)	414, 561
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	4 cut(s)	103, 118, 413, 1056
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	1108, 1132
Bse1I	ACTGG	3 cut(s)	271, 1091, 1187
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	794, 1057
BseDI	CCNNGG	4 cut(s)	103, 118, 413, 1056
BseGI	GGATG	8 cut(s)	430, 523, 624, 754, 789, 802, 952, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	1108, 1132
BseMII	CTCAG	4 cut(s)	536, 840, 891, 1107
BseNI	ACTGG	3 cut(s)	271, 1091, 1187
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	1 cut(s)	899
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	324, 352, 624
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	46, 120
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	108, 270, 951, 1125
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	229, 413, 560
BslI	CCNNNNNNNGG	2 cut(s)	1108, 1132
BsmAI	GTCTC	3 cut(s)	366, 696, 826
BsmBI	CGTCTC	2 cut(s)	366, 696
BsnI	GGCC	4 cut(s)	108, 270, 951, 1125
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
BspANI	GGCC	4 cut(s)	108, 270, 951, 1125
BspCNI	CTCAG	4 cut(s)	535, 841, 892, 1108
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	46, 120
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	3 cut(s)	425, 482, 1084
BspQI	GCTCTTC	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	271, 1091, 1187
BssECI	CCNNGG	4 cut(s)	103, 118, 413, 1056
BssMI	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	794, 1057
Bst4CI	ACNGT	1 cut(s)	1029
Bst6I	CTCTTC	3 cut(s)	17, 885, 999
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	213, 335, 534
BstDEI	CTNAG	5 cut(s)	522, 849, 900, 1037, 1116
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	8 cut(s)	430, 523, 624, 754, 789, 802, 952, 1057
BstFNI	CGCG	2 cut(s)	46, 120
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	7 cut(s)	238, 249, 315, 420, 477, 624, 1079
BstMAI	GTCTC	3 cut(s)	366, 696, 826
BstMBI	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 117, 396
BstNI	CCWGG	2 cut(s)	794, 1057
BstNSI	RCATGY	3 cut(s)	514, 536, 1065
BstSCI	CCNGG	4 cut(s)	412, 559, 792, 1055
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	899
BstUI	CGCG	2 cut(s)	46, 120
BstV1I	GCAGC	3 cut(s)	324, 352, 624
BstV2I	GAAGAC	2 cut(s)	809, 978
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	108, 270, 951, 1125
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	8 cut(s)	430, 523, 624, 754, 789, 802, 952, 1057
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	2 cut(s)	897, 911
Cac8I	GCNNGC	3 cut(s)	213, 335, 534
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	217
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	4 cut(s)	112, 383, 499, 525
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	8 cut(s)	500, 511, 533, 598, 659, 862, 962, 1062
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	5 cut(s)	522, 849, 900, 1037, 1116
DpnI	GATC	7 cut(s)	237, 248, 314, 419, 476, 623, 1078
DpnII	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
DraIII	CACNNNGTG	1 cut(s)	1073
EaeI	YGGCCR	3 cut(s)	106, 949, 1123
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	17, 885, 999
EarI	CTCTTC	3 cut(s)	17, 885, 999
EciI	GGCGGA	3 cut(s)	83, 384, 479
EclXI	CGGCCG	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	979
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	3 cut(s)	329, 933, 990
EcoRII	CCWGG	2 cut(s)	792, 1055
EcoRV	GATATC	1 cut(s)	979
Esp3I	CGTCTC	2 cut(s)	366, 696
FaeI	CATG	8 cut(s)	503, 514, 536, 601, 662, 865, 965, 1065
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FatI	CATG	8 cut(s)	499, 510, 532, 597, 658, 861, 961, 1061
FauI	CCCGC	3 cut(s)	32, 51, 245
Fnu4HI	GCNGC	6 cut(s)	109, 121, 338, 341, 400, 638
FokI	GGATG	8 cut(s)	437, 530, 631, 761, 776, 809, 959, 1064
Fsp4HI	GCNGC	6 cut(s)	109, 121, 338, 341, 400, 638
FspBI	CTAG	2 cut(s)	1020, 1071
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	6 cut(s)	109, 121, 338, 341, 400, 638
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	4 cut(s)	108, 270, 951, 1125
HapII	CCGG	3 cut(s)	229, 413, 560
HgaI	GACGC	4 cut(s)	112, 383, 499, 525
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	8 cut(s)	503, 514, 536, 601, 662, 865, 965, 1065
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	4 cut(s)	225, 579, 1157, 1172
HpaI	GTTAAC	1 cut(s)	859
HpaII	CCGG	3 cut(s)	229, 413, 560
HphI	GGTGA	6 cut(s)	144, 153, 469, 768, 1059, 1178
Hpy166II	GTNNAC	2 cut(s)	859, 1067
Hpy188I	TCNGA	6 cut(s)	348, 517, 525, 913, 1111, 1162
Hpy188III	TCNNGA	5 cut(s)	229, 262, 500, 830, 1032
Hpy8I	GTNNAC	2 cut(s)	859, 1067
Hpy99I	CGWCG	5 cut(s)	38, 41, 128, 389, 446
HpyAV	CCTTC	5 cut(s)	142, 359, 829, 908, 1157
HpyCH4III	ACNGT	1 cut(s)	1029
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	4 cut(s)	340, 569, 591, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 117, 396
HpyF3I	CTNAG	5 cut(s)	522, 849, 900, 1037, 1116
HpySE526I	ACGT	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	8 cut(s)	503, 514, 536, 601, 662, 865, 965, 1065
HspAI	GCGC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	859
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	145, 255, 607
Lsp1109I	GCAGC	3 cut(s)	324, 352, 624
LweI	GCATC	4 cut(s)	335, 508, 739, 1042
MaeI	CTAG	2 cut(s)	1020, 1071
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	304, 1178
MalI	GATC	7 cut(s)	237, 248, 314, 419, 476, 623, 1078
MboI	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
MboII	GAAGA	6 cut(s)	4, 374, 814, 902, 983, 1016
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	899
MlsI	TGGCCA	2 cut(s)	951, 1125
MluCI	AATT	3 cut(s)	193, 551, 765
MluNI	TGGCCA	2 cut(s)	951, 1125
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	495
Mox20I	TGGCCA	2 cut(s)	951, 1125
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	2 cut(s)	951, 1125
MseI	TTAA	3 cut(s)	575, 858, 875
MslI	CAYNNNNRTG	1 cut(s)	941
Msp20I	TGGCCA	2 cut(s)	951, 1125
MspA1I	CMGCKG	2 cut(s)	120, 1096
MspI	CCGG	3 cut(s)	229, 413, 560
MspR9I	CCNGG	4 cut(s)	414, 561, 794, 1057
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	794, 1057
MvnI	CGCG	2 cut(s)	46, 120
MwoI	GCNNNNNNNGC	3 cut(s)	24, 117, 396
NciI	CCSGG	2 cut(s)	414, 561
NdeII	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
NlaIII	CATG	8 cut(s)	503, 514, 536, 601, 662, 865, 965, 1065
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	2 cut(s)	84, 472
NmuCI	GTSAC	1 cut(s)	1178
NspI	RCATGY	3 cut(s)	514, 536, 1065
OliI	CACNNNNGTG	1 cut(s)	941
PaeI	GCATGC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	225, 1157, 1172
PfoI	TCCNGGA	2 cut(s)	559, 792
PkrI	GCNGC	6 cut(s)	110, 122, 339, 342, 401, 639
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	792, 1055
PspGI	CCWGG	2 cut(s)	792, 1055
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	1096
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
RseI	CAYNNNNRTG	1 cut(s)	941
SacII	CCGCGG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	575, 858, 875
SatI	GCNGC	6 cut(s)	109, 121, 338, 341, 400, 638
Sau3AI	GATC	7 cut(s)	235, 246, 312, 417, 474, 621, 1076
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	4 cut(s)	414, 561, 794, 1057
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	4 cut(s)	335, 508, 739, 1042
SfcI	CTRYAG	1 cut(s)	338
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	828
SmoI	CTYRAG	1 cut(s)	828
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	3 cut(s)	193, 551, 765
SspMI	CTAG	2 cut(s)	1020, 1071
StyD4I	CCNGG	4 cut(s)	412, 559, 792, 1055
TaaI	ACNGT	1 cut(s)	1029
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	329, 477
TaqII	GACCGA	2 cut(s)	896, 1131
TasI	AATT	3 cut(s)	193, 551, 765
TauI	GCSGC	3 cut(s)	111, 123, 402
TfiI	GAWTC	3 cut(s)	225, 1157, 1172
Tru1I	TTAA	3 cut(s)	575, 858, 875
Tru9I	TTAA	3 cut(s)	575, 858, 875
TscAI	CASTG	2 cut(s)	904, 911
TseFI	GTSAC	1 cut(s)	1178
TseI	GCWGC	3 cut(s)	337, 340, 637
Tsp45I	GTSAC	1 cut(s)	1178
TspDTI	ATGAA	3 cut(s)	441, 669, 978
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	904, 911
XceI	RCATGY	3 cut(s)	514, 536, 1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133
XspI	CTAG	2 cut(s)	1020, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.