Prupe.7G249100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
21115707 .. 21120533
4827 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G249100.2

Sequence Viewer

Length: 1239 bp
ATGTCTTGGCTCCTCGGCTCTCTCCAACCAGACGATCCACATGATGAAGCCAAGCAACCACAGAGTCCTTCCAGTTCCCGCGTACCAAACGACTTGTCGTTTCTCGGCCAAACCCTCGGTCGCCAACTCCGCGGCGTCGCCAGCTTCCTCGTTCCACCACCACCCTCATCATCACCGTCCCACGACGCCGTTCCCTCCTCCAATTCTCAACCGCAGCCGCCGTCGCAATCGCAATCGCAATCGCAAGCGCTTTTAGGAATCCGAAACGATCTGGTGGAGATCAGCGGCAGCTTCAAGAGCGGTCTCTCGCTTCTCTCTACAAATAGTAACAAAGCCGTCACTGAGATCTCCAAGTTCGCTTCGAACTTGTTGCAGCTTCAGAACGAAGCTCTGGAAGACGATGATGATGATGATGATGATGATGACTGTTCCGTGCCGGGGATTACCGACGACGTTATCGGTTTCGTCACCGAAATTTCGGTGCTGCCAAACTATTGGACCGACTTTCCTATACCAGTCGATCATGATTTCAGCATGTCTGATGCTCAGAGAGAACATGCCTCCACTGTTGAACGATTGGTTCCAGGCTTTGCAGACCTAAGAACCAGACTTGGCAGTTCCATGAGCGAGAAACGATTTTGGATGATCTATTTCTTGCTGTTGCTTCCGAGACTAAATGAACACGATTTTCAGCTTCTATCAACCCCCAAGATTGTTGACGCAAGAGATGTGCTTCTGCACAAGCTTCAAAACAAGAGGAACACACAGGCGGATAGCTGTGAGAAGTCAATTCTTGATTCACCTAAAAAGGACATCCAGGTTGGAAAGGCACAAGGGGTGGAAATCTCATCTCAAGAAAATGAAGCTTTGACTGAGATAGTTAATACAGCAGGAAGGTTAAAGATCGATGACGAAGAGAGCACTGAGCAGTGGTCTGAAGAGGCAAGTATTAGTTCTGGCACTTTCGTGGATGGCCAAAGGAAACATGAAACTGAAGAGGATATCTCATTCAGCGATTTAGAGGACGATGAAAATGACCTTTCTAGTTCCACTAGACTATCAGGCCTAAGGCGAGGACGAGACGTCAGGGCATGTTCACCCAATGGATCAAATGACTGGGTTCAGCTGAATAGAAGTTCTGAGATTGAGGGTGGCCAGCGAAAGGCTGGTCAGTCAAAAGAGAGAGATTCAGAAGGTGAGGATTCAAATGACTGGCTTACTGTAGATGGGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

45.48

Weight (kDa)

4.42

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1086
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 2 cut(s) 81, 132
AciI CCGC 8 cut(s) 79, 130, 132, 212, 218, 285, 300, 770
AclWI GGATC 2 cut(s) 29, 1114
AcoI YGGCCR 3 cut(s) 106, 973, 1153
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 3 cut(s) 362, 957, 1014
AcyI GRCGYC 3 cut(s) 135, 186, 1083
AfaI GTAC 1 cut(s) 84
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 438, 1162
AgsI TTSAA 4 cut(s) 295, 572, 749, 1206
AhdI GACNNNNNGTC 1 cut(s) 1082
AjnI CCWGG 2 cut(s) 583, 816
AleI CACNNNNGTG 1 cut(s) 965
AluBI AGCT 9 cut(s) 144, 291, 376, 389, 694, 745, 777, 866, 1126
AluI AGCT 9 cut(s) 144, 291, 376, 389, 694, 745, 777, 866, 1126
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 3 cut(s) 308, 664, 1074
AlwI GGATC 2 cut(s) 29, 1114
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 4 cut(s) 106, 973, 1063, 1153
ApeKI GCWGC 4 cut(s) 214, 288, 373, 484
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 6 cut(s) 80, 103, 112, 135, 1153, 1185
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 5 cut(s) 165, 460, 792, 1089, 1208
AsuII TTCGAA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 498
AxyI CCTNAGG 1 cut(s) 1067
BalI TGGCCA 2 cut(s) 975, 1155
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 923
BbvI GCAGC 4 cut(s) 226, 300, 385, 471
BccI CCATC 2 cut(s) 965, 1220
BceAI ACGGC 3 cut(s) 173, 205, 320
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciT130I CCWGG 2 cut(s) 585, 818
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 3 cut(s) 308, 664, 1074
BfaI CTAG 2 cut(s) 1044, 1053
BfmI CTRYAG 1 cut(s) 1221
BfoI RGCGCY 1 cut(s) 251
BglII AGATCT 1 cut(s) 345
BisI GCNGC 7 cut(s) 133, 215, 218, 286, 289, 374, 485
BlsI GCNGC 7 cut(s) 134, 216, 219, 287, 290, 375, 486
Bme1390I CCNGG 3 cut(s) 438, 585, 818
Bme18I GGWCC 1 cut(s) 498
BmeRI GACNNNNNGTC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 11, 582
BmrFI CCNGG 3 cut(s) 438, 585, 818
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
Bpu14I TTCGAA 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 837
BpuMI CCSGG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 906
BsaHI GRCGYC 3 cut(s) 135, 186, 1083
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 4 cut(s) 13, 115, 130, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 1162
Bse1I ACTGG 4 cut(s) 72, 515, 1121, 1217
Bse21I CCTNAGG 1 cut(s) 1067
BseBI CCWGG 2 cut(s) 585, 818
BseCI ATCGAT 1 cut(s) 906
BseDI CCNNGG 4 cut(s) 13, 115, 130, 437
BseGI GGATG 3 cut(s) 648, 813, 976
BseLI CCNNNNNNNGG 2 cut(s) 438, 1162
BseMII CTCAG 5 cut(s) 333, 560, 864, 915, 1131
BseNI ACTGG 4 cut(s) 72, 515, 1121, 1217
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 4 cut(s) 226, 300, 385, 471
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 2 cut(s) 81, 132
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 4 cut(s) 108, 975, 1065, 1155
BshVI ATCGAT 1 cut(s) 906
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 923
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 438, 1162
BsmAI GTCTC 3 cut(s) 308, 664, 1074
BsmBI CGTCTC 1 cut(s) 1074
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 4 cut(s) 108, 975, 1065, 1155
Bso31I GGTCTC 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 923
Bsp143I GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
BspACI CCGC 8 cut(s) 79, 130, 132, 212, 218, 285, 300, 770
BspANI GGCC 4 cut(s) 108, 975, 1065, 1155
BspCNI CTCAG 5 cut(s) 334, 559, 865, 916, 1132
BspDI ATCGAT 1 cut(s) 906
BspFNI CGCG 2 cut(s) 81, 132
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 11, 582
BspPI GGATC 2 cut(s) 29, 1114
BspT104I TTCGAA 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 300
BsrI ACTGG 4 cut(s) 72, 515, 1121, 1217
BssECI CCNNGG 4 cut(s) 13, 115, 130, 437
BssMI GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
BssNI GRCGYC 3 cut(s) 135, 186, 1083
Bst2UI CCWGG 2 cut(s) 585, 818
Bst4CI ACNGT 4 cut(s) 177, 428, 568, 1222
Bst6I CTCTTC 3 cut(s) 909, 933, 990
BstACI GRCGYC 3 cut(s) 135, 186, 1083
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 142, 246, 1157
BstDEI CTNAG 7 cut(s) 342, 546, 599, 873, 924, 1067, 1140
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 3 cut(s) 648, 813, 976
BstFNI CGCG 2 cut(s) 81, 132
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 8 cut(s) 37, 271, 282, 348, 523, 648, 906, 1109
BstMAI GTCTC 3 cut(s) 308, 664, 1074
BstMBI GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 129, 141, 223, 297
BstNI CCWGG 2 cut(s) 585, 818
BstNSI RCATGY 3 cut(s) 538, 560, 1095
BstSCI CCNGG 3 cut(s) 436, 583, 816
BstSFI CTRYAG 1 cut(s) 1221
BstUI CGCG 2 cut(s) 81, 132
BstV1I GCAGC 4 cut(s) 226, 300, 385, 471
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 906
Bsu36I CCTNAGG 1 cut(s) 1067
BsuRI GGCC 4 cut(s) 108, 975, 1065, 1155
BsuTUI ATCGAT 1 cut(s) 906
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 3 cut(s) 648, 813, 976
BtsI GCAGTG 1 cut(s) 935
BtsIMutI CAGTG 4 cut(s) 339, 564, 921, 935
Cac8I GCNNGC 3 cut(s) 142, 246, 1157
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 498
Cfr42I CCGCGG 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 906
CseI GACGC 3 cut(s) 124, 194, 728
Csp6I GTAC 1 cut(s) 83
CviAII CATG 7 cut(s) 41, 524, 535, 557, 622, 986, 1092
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 7 cut(s) 342, 546, 599, 873, 924, 1067, 1140
DpnI GATC 8 cut(s) 36, 270, 281, 347, 522, 647, 905, 1108
DpnII GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
DriI GACNNNNNGTC 1 cut(s) 1082
EaeI YGGCCR 3 cut(s) 106, 973, 1153
Eam1104I CTCTTC 3 cut(s) 909, 933, 990
Eam1105I GACNNNNNGTC 1 cut(s) 1082
EarI CTCTTC 3 cut(s) 909, 933, 990
EciI GGCGGA 1 cut(s) 785
Eco147I AGGCCT 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 498
Eco47III AGCGCT 1 cut(s) 249
Eco57I CTGAAG 3 cut(s) 362, 957, 1014
Eco81I CCTNAGG 1 cut(s) 1067
EcoRII CCWGG 2 cut(s) 583, 816
EcoRV GATATC 1 cut(s) 1003
Esp3I CGTCTC 1 cut(s) 1074
FaeI CATG 7 cut(s) 44, 527, 538, 560, 625, 989, 1095
FaiI YATR 8 cut(s) 42, 512, 525, 536, 558, 623, 987, 1093
FaqI GGGAC 1 cut(s) 163
FatI CATG 7 cut(s) 40, 523, 534, 556, 621, 985, 1091
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 7 cut(s) 133, 215, 218, 286, 289, 374, 485
FokI GGATG 3 cut(s) 655, 800, 983
Fsp4HI GCNGC 7 cut(s) 133, 215, 218, 286, 289, 374, 485
FspBI CTAG 2 cut(s) 1044, 1053
GlaI GCGC 1 cut(s) 249
GluI GCNGC 7 cut(s) 133, 215, 218, 286, 289, 374, 485
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 4 cut(s) 108, 975, 1065, 1155
HapII CCGG 1 cut(s) 437
HgaI GACGC 3 cut(s) 124, 194, 728
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 3 cut(s) 135, 186, 1083
Hin1II CATG 7 cut(s) 44, 527, 538, 560, 625, 989, 1095
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 2 cut(s) 743, 864
HinfI GANTC 5 cut(s) 64, 258, 797, 1187, 1202
HpaII CCGG 1 cut(s) 437
HphI GGTGA 5 cut(s) 165, 460, 792, 1089, 1208
Hpy166II GTNNAC 2 cut(s) 718, 1097
Hpy188I TCNGA 8 cut(s) 263, 381, 541, 549, 669, 937, 1141, 1192
Hpy188III TCNNGA 5 cut(s) 295, 392, 524, 794, 854
Hpy8I GTNNAC 2 cut(s) 718, 1097
Hpy99I CGWCG 5 cut(s) 140, 188, 226, 452, 455
HpyAV CCTTC 3 cut(s) 78, 888, 1187
HpyCH4III ACNGT 4 cut(s) 177, 428, 568, 1222
HpyCH4IV ACGT 2 cut(s) 453, 1083
HpyCH4V TGCA 3 cut(s) 373, 593, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 141, 223, 297
HpyF3I CTNAG 7 cut(s) 342, 546, 599, 873, 924, 1067, 1140
HpySE526I ACGT 2 cut(s) 453, 1083
Hsp92I GRCGYC 3 cut(s) 135, 186, 1083
Hsp92II CATG 7 cut(s) 44, 527, 538, 560, 625, 989, 1095
HspAI GCGC 1 cut(s) 248
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 4 cut(s) 226, 300, 385, 471
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 1044, 1053
MaeII ACGT 2 cut(s) 453, 1083
MaeIII GTNAC 3 cut(s) 326, 337, 466
MalI GATC 8 cut(s) 36, 270, 281, 347, 522, 647, 905, 1108
MbiI CCGCTC 1 cut(s) 300
MboI GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
MboII GAAGA 4 cut(s) 407, 926, 950, 1007
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 923
MlsI TGGCCA 2 cut(s) 975, 1155
MluCI AATT 3 cut(s) 202, 474, 789
MluNI TGGCCA 2 cut(s) 975, 1155
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 2 cut(s) 49, 802
Mox20I TGGCCA 2 cut(s) 975, 1155
MscI TGGCCA 2 cut(s) 975, 1155
MseI TTAA 2 cut(s) 882, 899
MslI CAYNNNNRTG 1 cut(s) 965
Msp20I TGGCCA 2 cut(s) 975, 1155
MspA1I CMGCKG 3 cut(s) 132, 285, 1126
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 3 cut(s) 438, 585, 818
MvaI CCWGG 2 cut(s) 585, 818
MvnI CGCG 2 cut(s) 81, 132
MwoI GCNNNNNNNGC 4 cut(s) 129, 141, 223, 297
NciI CCSGG 1 cut(s) 438
NdeII GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
NlaIII CATG 7 cut(s) 44, 527, 538, 560, 625, 989, 1095
NlaIV GGNNCC 2 cut(s) 11, 582
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 337, 466
NspI RCATGY 3 cut(s) 538, 560, 1095
NspV TTCGAA 1 cut(s) 362
OliI CACNNNNGTG 1 cut(s) 965
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 1065
PfeI GAWTC 4 cut(s) 258, 797, 1187, 1202
PkrI GCNGC 7 cut(s) 134, 216, 219, 287, 290, 375, 486
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 583, 816
PspGI CCWGG 2 cut(s) 583, 816
PspN4I GGNNCC 2 cut(s) 11, 582
PspPI GGNCC 1 cut(s) 498
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 1126
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 965
SacII CCGCGG 1 cut(s) 133
SaqAI TTAA 2 cut(s) 882, 899
SatI GCNGC 7 cut(s) 133, 215, 218, 286, 289, 374, 485
Sau3AI GATC 8 cut(s) 34, 268, 279, 345, 520, 645, 903, 1106
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 3 cut(s) 438, 585, 818
SduI GDGCHC 1 cut(s) 923
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 1221
Sfr303I CCGCGG 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 362
SgrBI CCGCGG 1 cut(s) 133
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
Sse9I AATT 3 cut(s) 202, 474, 789
SseBI AGGCCT 1 cut(s) 1065
SsiI CCGC 8 cut(s) 79, 130, 132, 212, 218, 285, 300, 770
SspMI CTAG 2 cut(s) 1044, 1053
StuI AGGCCT 1 cut(s) 1065
StyD4I CCNGG 3 cut(s) 436, 583, 816
TaaI ACNGT 4 cut(s) 177, 428, 568, 1222
TaiI ACGT 2 cut(s) 456, 1086
TaqI TCGA 3 cut(s) 362, 519, 906
TaqII GACCGA 2 cut(s) 107, 515
TasI AATT 3 cut(s) 202, 474, 789
TauI GCSGC 3 cut(s) 135, 220, 288
TfiI GAWTC 4 cut(s) 258, 797, 1187, 1202
Tru1I TTAA 2 cut(s) 882, 899
Tru9I TTAA 2 cut(s) 882, 899
TscAI CASTG 4 cut(s) 346, 571, 928, 935
TseFI GTSAC 2 cut(s) 337, 466
TseI GCWGC 4 cut(s) 214, 288, 373, 484
Tsp45I GTSAC 2 cut(s) 337, 466
TspDTI ATGAA 5 cut(s) 60, 693, 876, 1002, 1044
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 4 cut(s) 346, 571, 928, 935
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 1 cut(s) 474
XceI RCATGY 3 cut(s) 538, 560, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 1163
XspI CTAG 2 cut(s) 1044, 1053
ZraI GACGTC 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.