Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Forward (+)

113899 .. 115915

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgtcttggctcttcacctctctccaacccgacgcggaaaacgacgcgtcgtttctcggccaaaccctcacccgccaactccgcggcgtcgccaccttcctcgctccgccgccctcctcctccaagtcccttccctcctccgattctccaccgccgtcgccgtcgccgtcgccggccctcttgggagtccgaaacgatctcgcggaattgggcgggagctttaagaccggcctctcgcttctctccaccggcctctcgcttctctccgtcgccggaatctccaaattggcttcgaacttgctcccggttcggaacggagctccggaagaaggcggcggcggcggtcccgtcccggggattaccgatgagattctcggcttcgtcgctcagatttcgaagcttccggactgttggaccggctttcctataccactggaccaccatgattttagcatgtccaatgctcagagaaaacatgcctccactgtcgaacaattggttccggggtttgctgatctgagagtcagagtttgcagttcgatgagtgaggagcaattttggatgatctatttcttgttgctgcttccaagactaaatgcagatgattttgagcttctgtcaacccccaagattgttgaagcaagaaatgtacttctgcacaagcttcaaaagaacacgcagctatccacctctgaggagtcaactcttcattcaactgaaaaggacacccaggttgagaagacacaagggggagaattctcctctgcagaaaagaaagatctgacagagattgtaaatacagctgaaaggttaagaatcgacgatgaagagagcactgagcaatggtccgaagcagcgagcattagttctggtacttttgtggatgacccaaaaaaacttgaacatgaagacgatatctcattcagcgatttagaggatgacgagaatgacatttctactagatcgtcaggcctaaggccagcaaaggacgttagggaatgttcacctagtggatcaaatcattcaaatgactgggttcggctgaatagaagtgctgcgattgatggtggccatcaaaggactggtacatcgaaagagaaagattcagaaggtgaggagtcgaatgactggcttactgtagataagtttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

384

Amino Acids

41.74

Weight (kDa)

4.65

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	35, 47, 84, 203
AccIII	TCCGGA	2 cut(s)	322, 403
AclWI	GGATC	1 cut(s)	1021
AcoI	YGGCCR	2 cut(s)	58, 1069
AcsI	RAATTY	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	1010
AfaI	GTAC	3 cut(s)	651, 874, 1087
AfiI	CCNNNNNNNGG	3 cut(s)	329, 353, 354
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	638, 668, 714, 902, 1026
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	7 cut(s)	219, 320, 400, 613, 664, 682, 803
AluI	AGCT	7 cut(s)	219, 320, 400, 613, 664, 682, 803
Alw21I	GWGCWC	2 cut(s)	322, 836
AlwI	GGATC	1 cut(s)	1021
Ama87I	CYCGRG	1 cut(s)	352
Aor13HI	TCCGGA	2 cut(s)	322, 403
AoxI	GGCC	7 cut(s)	58, 174, 229, 250, 970, 977, 1069
ApeKI	GCWGC	4 cut(s)	580, 679, 854, 1055
ApoI	RAATTY	1 cut(s)	755
AspS9I	GGNCC	5 cut(s)	175, 344, 414, 436, 846
AsuC2I	CCSGG	4 cut(s)	305, 353, 354, 504
AsuHPI	GGTGA	4 cut(s)	7, 61, 996, 1124
AsuII	TTCGAA	2 cut(s)	293, 395
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	4 cut(s)	344, 414, 436, 846
AxyI	CCTNAGG	1 cut(s)	974
BaeI	ACNNNNGTAYC	2 cut(s)	864, 897
BalI	TGGCCA	1 cut(s)	1071
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	746, 915
Bbv12I	GWGCWC	2 cut(s)	322, 836
BbvI	GCAGC	4 cut(s)	567, 691, 866, 1042
BccI	CCATC	2 cut(s)	1058, 1080
BceAI	ACGGC	3 cut(s)	139, 145, 151
BciT130I	CCWGG	1 cut(s)	731
BcnI	CCSGG	4 cut(s)	305, 353, 354, 504
BfaI	CTAG	2 cut(s)	960, 1008
BfmI	CTRYAG	2 cut(s)	765, 1137
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	9 cut(s)	85, 110, 334, 337, 340, 581, 680, 855, 1056
BlsI	GCNGC	9 cut(s)	86, 111, 335, 338, 341, 582, 681, 856, 1057
Bme1390I	CCNGG	5 cut(s)	305, 353, 354, 504, 731
Bme18I	GGWCC	4 cut(s)	344, 414, 436, 846
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	5 cut(s)	175, 344, 414, 436, 846
BmiI	GGNNCC	2 cut(s)	346, 501
BmrFI	CCNGG	5 cut(s)	305, 353, 354, 504, 731
BmrI	ACTGGG	1 cut(s)	1042
BmuI	ACTGGG	1 cut(s)	1042
BpiI	GAAGAC	2 cut(s)	746, 915
Bpu14I	TTCGAA	2 cut(s)	293, 395
BpuMI	CCSGG	4 cut(s)	305, 353, 354, 504
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	5 cut(s)	82, 352, 353, 503, 729
BsaWI	WCCGGW	2 cut(s)	322, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 353, 354
Bse118I	RCCGGY	4 cut(s)	172, 227, 248, 416
Bse1I	ACTGG	4 cut(s)	438, 1037, 1087, 1133
Bse21I	CCTNAGG	1 cut(s)	974
Bse3DI	GCAATG	1 cut(s)	848
BseAI	TCCGGA	2 cut(s)	322, 403
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	5 cut(s)	82, 352, 353, 503, 729
BseGI	GGATG	3 cut(s)	567, 889, 943
BseLI	CCNNNNNNNGG	3 cut(s)	329, 353, 354
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	5 cut(s)	401, 479, 509, 684, 828
BseNI	ACTGG	4 cut(s)	438, 1037, 1087, 1133
BseRI	GAGGAG	7 cut(s)	106, 109, 127, 563, 710, 751, 1130
BseXI	GCAGC	4 cut(s)	567, 691, 866, 1042
BsgI	GTGCAG	1 cut(s)	641
Bsh1236I	CGCG	4 cut(s)	35, 47, 84, 203
BshFI	GGCC	7 cut(s)	60, 176, 231, 252, 972, 979, 1071
BsiHKAI	GWGCWC	2 cut(s)	322, 836
BsiHKCI	CYCGRG	1 cut(s)	352
BslFI	GGGAC	3 cut(s)	112, 330, 335
BslI	CCNNNNNNNGG	3 cut(s)	329, 353, 354
BsmFI	GGGAC	3 cut(s)	112, 330, 335
BsnI	GGCC	7 cut(s)	60, 176, 231, 252, 972, 979, 1071
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	2 cut(s)	293, 395
Bsp1286I	GDGCHC	2 cut(s)	322, 836
Bsp13I	TCCGGA	2 cut(s)	322, 403
Bsp143I	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
BspANI	GGCC	7 cut(s)	60, 176, 231, 252, 972, 979, 1071
BspCNI	CTCAG	5 cut(s)	400, 478, 510, 685, 829
BspEI	TCCGGA	2 cut(s)	322, 403
BspFNI	CGCG	4 cut(s)	35, 47, 84, 203
BspLI	GGNNCC	2 cut(s)	346, 501
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	1 cut(s)	1021
BspQI	GCTCTTC	1 cut(s)	17
BspT104I	TTCGAA	2 cut(s)	293, 395
BsrDI	GCAATG	1 cut(s)	848
BsrFI	RCCGGY	4 cut(s)	172, 227, 248, 416
BsrI	ACTGG	4 cut(s)	438, 1037, 1087, 1133
BssAI	RCCGGY	4 cut(s)	172, 227, 248, 416
BssECI	CCNNGG	5 cut(s)	82, 352, 353, 503, 729
BssMI	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	3 cut(s)	410, 487, 1138
Bst6I	CTCTTC	3 cut(s)	17, 711, 822
BstACI	GRCGYC	1 cut(s)	87
BstBI	TTCGAA	2 cut(s)	293, 395
BstC8I	GCNNGC	3 cut(s)	174, 859, 981
BstDEI	CTNAG	6 cut(s)	387, 465, 518, 693, 837, 974
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	567, 889, 943
BstFNI	CGCG	4 cut(s)	35, 47, 84, 203
BstKTI	GATC	6 cut(s)	199, 517, 567, 781, 965, 1016
BstMBI	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 339
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	2 cut(s)	457, 479
BstSCI	CCNGG	5 cut(s)	303, 351, 352, 502, 729
BstSFI	CTRYAG	2 cut(s)	765, 1137
BstUI	CGCG	4 cut(s)	35, 47, 84, 203
BstV1I	GCAGC	4 cut(s)	567, 691, 866, 1042
BstV2I	GAAGAC	2 cut(s)	746, 915
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
Bsu36I	CCTNAGG	1 cut(s)	974
BsuRI	GGCC	7 cut(s)	60, 176, 231, 252, 972, 979, 1071
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	567, 889, 943
BtsIMutI	CAGTG	3 cut(s)	431, 483, 834
Cac8I	GCNNGC	3 cut(s)	174, 859, 981
Cfr10I	RCCGGY	4 cut(s)	172, 227, 248, 416
Cfr13I	GGNCC	5 cut(s)	175, 344, 414, 436, 846
Cfr42I	CCGCGG	1 cut(s)	85
Cfr9I	CCCGGG	1 cut(s)	352
CseI	GACGC	4 cut(s)	36, 41, 53, 76
Csp6I	GTAC	3 cut(s)	650, 873, 1086
CviAII	CATG	4 cut(s)	443, 454, 476, 905
CviQI	GTAC	3 cut(s)	650, 873, 1086
DdeI	CTNAG	6 cut(s)	387, 465, 518, 693, 837, 974
DpnI	GATC	6 cut(s)	198, 516, 566, 780, 964, 1015
DpnII	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
DraIII	CACNNNGTG	1 cut(s)	1010
EaeI	YGGCCR	2 cut(s)	58, 1069
Eam1104I	CTCTTC	3 cut(s)	17, 711, 822
EarI	CTCTTC	3 cut(s)	17, 711, 822
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	4 cut(s)	344, 414, 436, 846
Eco53kI	GAGCTC	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	974
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	4 cut(s)	446, 457, 479, 908
FaiI	YATR	5 cut(s)	428, 444, 455, 477, 906
FaqI	GGGAC	3 cut(s)	112, 330, 335
FatI	CATG	4 cut(s)	442, 453, 475, 904
FauI	CCCGC	2 cut(s)	80, 206
Fnu4HI	GCNGC	9 cut(s)	85, 110, 334, 337, 340, 581, 680, 855, 1056
FokI	GGATG	3 cut(s)	574, 896, 950
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	9 cut(s)	85, 110, 334, 337, 340, 581, 680, 855, 1056
FspBI	CTAG	2 cut(s)	960, 1008
GluI	GCNGC	9 cut(s)	85, 110, 334, 337, 340, 581, 680, 855, 1056
HaeIII	GGCC	7 cut(s)	60, 176, 231, 252, 972, 979, 1071
HgaI	GACGC	4 cut(s)	36, 41, 53, 76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	446, 457, 479, 908
HincII	GTYRAC	2 cut(s)	621, 702
HindII	GTYRAC	2 cut(s)	621, 702
HindIII	AAGCTT	2 cut(s)	398, 662
HinfI	GANTC	9 cut(s)	143, 186, 276, 370, 522, 698, 816, 1103, 1118
HphI	GGTGA	4 cut(s)	7, 61, 996, 1124
Hpy166II	GTNNAC	3 cut(s)	621, 702, 1004
Hpy188III	TCNNGA	2 cut(s)	323, 404
Hpy8I	GTNNAC	3 cut(s)	621, 702, 1004
HpyAV	CCTTC	4 cut(s)	106, 140, 323, 1103
HpyCH4III	ACNGT	3 cut(s)	410, 487, 1138
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	4 cut(s)	534, 599, 658, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 339
HpyF3I	CTNAG	6 cut(s)	387, 465, 518, 693, 837, 974
HpySE526I	ACGT	1 cut(s)	990
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	446, 457, 479, 908
Kpn2I	TCCGGA	2 cut(s)	322, 403
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	6 cut(s)	109, 216, 306, 317, 325, 550
Lsp1109I	GCAGC	4 cut(s)	567, 691, 866, 1042
MaeI	CTAG	2 cut(s)	960, 1008
MaeII	ACGT	1 cut(s)	990
MalI	GATC	6 cut(s)	198, 516, 566, 780, 964, 1015
MboI	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
MboII	GAAGA	6 cut(s)	4, 338, 698, 751, 839, 920
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	2 cut(s)	322, 836
MlsI	TGGCCA	1 cut(s)	1071
MluCI	AATT	5 cut(s)	206, 284, 494, 554, 755
MluI	ACGCGT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	1071
MlyI	GAGTC	4 cut(s)	195, 531, 707, 1127
MmeI	TCCRAC	2 cut(s)	49, 392
Mox20I	TGGCCA	1 cut(s)	1071
MroI	TCCGGA	2 cut(s)	322, 403
MroNI	GCCGGC	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	1071
MseI	TTAA	2 cut(s)	222, 812
MslI	CAYNNNNRTG	1 cut(s)	1026
Msp20I	TGGCCA	1 cut(s)	1071
MspA1I	CMGCKG	2 cut(s)	84, 803
MspR9I	CCNGG	5 cut(s)	305, 353, 354, 504, 731
MunI	CAATTG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	4 cut(s)	35, 47, 84, 203
MwoI	GCNNNNNNNGC	2 cut(s)	81, 339
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	4 cut(s)	305, 353, 354, 504
NdeII	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	446, 457, 479, 908
NlaIV	GGNNCC	2 cut(s)	346, 501
NmeAIII	GCCGAG	2 cut(s)	36, 354
NspI	RCATGY	2 cut(s)	457, 479
NspV	TTCGAA	2 cut(s)	293, 395
PceI	AGGCCT	1 cut(s)	972
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 164
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	5 cut(s)	143, 276, 370, 816, 1103
PkrI	GCNGC	9 cut(s)	86, 111, 335, 338, 341, 582, 681, 856, 1057
PleI	GAGTC	4 cut(s)	194, 530, 706, 1126
PpsI	GAGTC	4 cut(s)	194, 530, 706, 1126
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	346, 501
PspPI	GGNCC	5 cut(s)	175, 344, 414, 436, 846
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	3 cut(s)	651, 874, 1087
RsaNI	GTAC	3 cut(s)	650, 873, 1086
RseI	CAYNNNNRTG	1 cut(s)	1026
SacI	GAGCTC	1 cut(s)	322
SacII	CCGCGG	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	222, 812
SatI	GCNGC	9 cut(s)	85, 110, 334, 337, 340, 581, 680, 855, 1056
Sau3AI	GATC	6 cut(s)	196, 514, 564, 778, 962, 1013
Sau96I	GGNCC	5 cut(s)	175, 344, 414, 436, 846
SchI	GAGTC	4 cut(s)	195, 531, 707, 1127
ScrFI	CCNGG	5 cut(s)	305, 353, 354, 504, 731
SduI	GDGCHC	2 cut(s)	322, 836
SfcI	CTRYAG	2 cut(s)	765, 1137
Sfr303I	CCGCGG	1 cut(s)	85
SfuI	TTCGAA	2 cut(s)	293, 395
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	4 cut(s)	344, 414, 436, 846
SmaI	CCCGGG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	1026
Sse9I	AATT	5 cut(s)	206, 284, 494, 554, 755
SseBI	AGGCCT	1 cut(s)	972
SspMI	CTAG	2 cut(s)	960, 1008
SstI	GAGCTC	1 cut(s)	322
StuI	AGGCCT	1 cut(s)	972
StyD4I	CCNGG	5 cut(s)	303, 351, 352, 502, 729
TaaI	ACNGT	3 cut(s)	410, 487, 1138
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	7 cut(s)	293, 395, 489, 539, 819, 1091, 1121
TasI	AATT	5 cut(s)	206, 284, 494, 554, 755
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	5 cut(s)	87, 112, 336, 339, 342
TfiI	GAWTC	5 cut(s)	143, 276, 370, 816, 1103
Tru1I	TTAA	2 cut(s)	222, 812
Tru9I	TTAA	2 cut(s)	222, 812
TscAI	CASTG	3 cut(s)	438, 490, 841
TseI	GCWGC	4 cut(s)	580, 679, 854, 1055
TspDTI	ATGAA	3 cut(s)	698, 840, 921
TspGWI	ACGGA	2 cut(s)	256, 330
TspMI	CCCGGG	1 cut(s)	352
TspRI	CASTG	3 cut(s)	438, 490, 841
VpaK11BI	GGWCC	4 cut(s)	344, 414, 436, 846
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	2 cut(s)	457, 479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1079
XmaI	CCCGGG	1 cut(s)	352
XspI	CTAG	2 cut(s)	960, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.