Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Forward (+)

1204703 .. 1205110

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACACAAGGGGAGGGAAGCTCGTCTCAAGAAAAGGAAGCCTCGACTGAAATAGTTAACACGACAGAAAGGTTTAAGACCGATGACGAAGAGGGCACTGAGCAGTGGTCTGAAGGTGCGAGTATTAGTTCTGGCACTTTTGTGGATGGCCAAAGAAAACACGAACCTGAAGATGATATCTCATTCAGCGATTTAGAGGACGAAGAGAATGACGTTTCTAGTAGACAATCAGGACTAAGGCAAGGACCGTATGCCAGGGCATGTTCACCCAATGGATCAAATGATTGGGTTCAGCTGAATCGAAGCTTGGAAAACGAGGGTGGCCGGCAAAGGGCTGGTCGGTCAAAAGGGAGAGATTCAGAAGGTGAGTATTCAAGTGACTGGCTTGCGGTAGATGAATATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

4.27

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	148, 322
AcuI	CTGAAG	2 cut(s)	132, 189
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	21, 295, 306
AluI	AGCT	3 cut(s)	21, 295, 306
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	2 cut(s)	148, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	258, 377
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	150
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	256
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	150, 324
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	150, 324
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	150, 324
BspCNI	CTCAG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	2 cut(s)	84, 198
BstC8I	GCNNGC	2 cut(s)	326, 387
BstDEI	CTNAG	2 cut(s)	99, 236
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	150, 324
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	96, 110
Cac8I	GCNNGC	2 cut(s)	326, 387
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	8 cut(s)	21, 41, 150, 295, 306, 324, 335, 385
CviKI_1	RGCY	8 cut(s)	21, 41, 150, 295, 306, 324, 335, 385
DdeI	CTNAG	2 cut(s)	99, 236
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	148, 322
Eam1104I	CTCTTC	2 cut(s)	84, 198
EarI	CTCTTC	2 cut(s)	84, 198
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	132, 189
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	264
FaiI	YATR	3 cut(s)	252, 262, 402
FatI	CATG	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	223
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	150, 324
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	2 cut(s)	298, 356
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	2 cut(s)	258, 377
Hpy166II	GTNNAC	3 cut(s)	58, 224, 266
Hpy188I	TCNGA	2 cut(s)	112, 361
Hpy188III	TCNNGA	2 cut(s)	29, 231
Hpy8I	GTNNAC	3 cut(s)	58, 224, 266
HpyAV	CCTTC	2 cut(s)	107, 356
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	99, 236
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	264
KroI	GCCGGC	1 cut(s)	324
KroNI	GCCGGC	1 cut(s)	326
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	117, 180, 216, 241, 268, 321, 338, 367
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	101, 182, 215
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	5 cut(s)	7, 52, 85, 190, 310
Mox20I	TGGCCA	1 cut(s)	150
MroNI	GCCGGC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	57, 75
MslI	CAYNNNNRTG	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
NaeI	GCCGGC	1 cut(s)	326
NdeII	GATC	1 cut(s)	275
NgoMIV	GCCGGC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	298, 356
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	57, 75
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	8 cut(s)	23, 74, 118, 169, 216, 297, 308, 367
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	44, 301
TaqII	GACCGA	2 cut(s)	95, 330
TfiI	GAWTC	2 cut(s)	298, 356
Tru1I	TTAA	2 cut(s)	57, 75
Tru9I	TTAA	2 cut(s)	57, 75
TscAI	CASTG	2 cut(s)	103, 110
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspRI	CASTG	2 cut(s)	103, 110
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.