Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Reverse (-)

61156598 .. 61157285

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG394600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATATGCTCACTTGTCCTCTGTCCTTACTTGTAGCCTCGCTGGACTTTCCACCGTCGTCATCCCCCCTTCCCTCCTCCGATACTCAACCTTCACCGTCGCCGGCGCTCTTGGGGGTTCGAAACGATCTCGCGGAATTGGGTAGGAGCTTCAAGACAGGCCTCTCGTTTCTCTCCATTGCCGAAATCTCCAAATTGGCTTCGAACTTGATGCCAGTTCGGAACGGAGCTTCGGAAGAAGACGGCGGCGGTTCCGTGCTAGGAATTACCAATGAAATTCTCGGCTTCGTCGCTCAGATTTTGAAGCTTTCGGACTATTGGACCCGCTTTCCTATACCACTGGACCACCATGGTAAAATTTCTCATCAACATTTTGTATTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

128

Amino Acids

13.72

Weight (kDa)

5.39

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	4 cut(s)	134, 246, 249, 325
AcsI	RAATTY	2 cut(s)	276, 357
AgsI	TTSAA	2 cut(s)	154, 304
AluBI	AGCT	3 cut(s)	150, 230, 307
AluI	AGCT	3 cut(s)	150, 230, 307
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	276, 357
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	321, 343
AsuHPI	GGTGA	1 cut(s)	87
AsuII	TTCGAA	2 cut(s)	121, 203
AvaII	GGWCC	2 cut(s)	321, 343
BbsI	GAAGAC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	321, 343
BmgT120I	GGNCC	2 cut(s)	321, 343
BmiI	GGNNCC	2 cut(s)	253, 323
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	246
Bpu14I	TTCGAA	2 cut(s)	121, 203
BsaJI	CCNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	215, 345
Bse3DI	GCAATG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	215, 345
BseRI	GAGGAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	162
Bsp119I	TTCGAA	2 cut(s)	121, 203
Bsp143I	GATC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	4 cut(s)	134, 246, 249, 325
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	253, 323
BspT104I	TTCGAA	2 cut(s)	121, 203
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	215, 345
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	57, 99
BstBI	TTCGAA	2 cut(s)	121, 203
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	321, 343
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	7 cut(s)	38, 150, 162, 200, 230, 285, 307
CviKI_1	RGCY	7 cut(s)	38, 150, 162, 200, 230, 285, 307
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	321, 343
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	353
FaiI	YATR	3 cut(s)	8, 335, 351
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	82, 222, 235, 297, 313
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	61, 103, 293
HpyAV	CCTTC	2 cut(s)	80, 102
HpyCH4III	ACNGT	2 cut(s)	57, 99
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	2 cut(s)	147, 227
LpnPI	CCDG	5 cut(s)	29, 117, 144, 228, 326
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	260
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	248, 251
MluCI	AATT	5 cut(s)	137, 194, 264, 276, 357
MnlI	CCTC	5 cut(s)	30, 49, 85, 88, 173
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MspI	CCGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	134
NaeI	GCCGGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	127
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	253, 323
NmeAIII	GCCGAG	1 cut(s)	261
NspV	TTCGAA	2 cut(s)	121, 203
PceI	AGGCCT	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	253, 323
PspPI	GGNCC	2 cut(s)	321, 343
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	321, 343
SetI	ASST	4 cut(s)	94, 152, 232, 309
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	2 cut(s)	121, 203
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	321, 343
Sse9I	AATT	5 cut(s)	137, 194, 264, 276, 357
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	4 cut(s)	134, 246, 249, 325
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	57, 99
TaqI	TCGA	2 cut(s)	121, 203
TasI	AATT	5 cut(s)	137, 194, 264, 276, 357
TauI	GCSGC	1 cut(s)	249
TscAI	CASTG	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	2 cut(s)	240, 244
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	321, 343
XapI	RAATTY	2 cut(s)	276, 357
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.