RLG00000015880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003259
Physical Location & Seq
Forward (+)
2052738 .. 2054666
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015880

Sequence Viewer

Length: 1125 bp
ATGTCTTGGCTCTTCACCTCTCTCCAACCCGACGCGGAAAACGACGCGTCGTTTCTCGGCCAAACCCTCACCCGCCAACTCCGCGGCGTCGCCACCTTCCTCGCTCCGCCGCCCTCCTCCTCCAAGTCCCTTCCCTCCTCCGATTCTCCACCGCCGTCGCCTTCCCCGGCGCTCTTGGGAGTCCGAAACGATCTCGCGGAATTGGGCGGGAGCTTCAAGACCGGCCTCTCGCTTCTCTCCGTCGCCGGAATCTCCAAATTGGCTTCGAACTTGCTCCTGGTTCGGAACGGAGCTCCGGAAGACGACGGCGGAGGTCCCGTGCCGGGGATTACCGATGAAATTCTCGGCTTCGTCGCTCAGATTTCGAAGCTTTCGGACTGTTGGACCGGCTTTCCTATACCACTGGACCACCATGATTTTAGCATGTCCAATGCTCAGAGAGAACATGCCTCCACTGTCGAACAATTGGTTCCAGGGTTTGCTGATCTAAGAGTCAGAGTTTGCAGTTCGATGAGTGAGGAGCAATTTTGGATGATCTATTTCTTGTTGCTGCTTCCAAGACTAAATGCAGATGATTTTGAGCTTCTGTCAACCCCCAAGATTGTTGAAGCAAGAGATGTACTTCTGCACAAGCTTCAAAAGAACACGCAGGTATCCACCTCTGAGGAGTCAACTCTTCATTCAACTGAAAAGGACACCCAGGTTGAGAAGACACAAGGGGGAGAATTCTCATCTGCAGAAAAGAAAGATCTGACAGAGATTGTAAATACAGCTGAAAGGTTAAGAATCAACGATGAAGAGAGCACTGAGCAATGGTCCGAAGCAGCGAGTATTAGTTCTGGTACTTTTGTGGATGACCCAAAAAAACTTGAACATGAAGACGATATCTCATTCAGCGATTTAGAGGATGACGAGAATGACATTTCTACTAGATCGTCAGGCCTAAGGCCAGCAAAGGACGTTAGGGAATGTTCTCCCAGTGGATCAAATCATTCAAATGACTGGGTTCGGCTGAATAGAAGTTCTGCGATTGATGGTGGCCATCAAAGGATTGGTACATCGAAAGAGAAAGATTCAGAAGGTGAGGAGTCGAATGACTGGCTCACTGTAGATAAGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

375

Amino Acids

40.89

Weight (kDa)

4.57

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 139 - 189 5e-07 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccII CGCG 4 cut(s) 35, 47, 84, 197
AccIII TCCGGA 1 cut(s) 295
AclWI GGATC 1 cut(s) 991
AcoI YGGCCR 2 cut(s) 58, 1039
AcsI RAATTY 2 cut(s) 339, 725
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 621, 844, 1057
AfiI CCNNNNNNNGG 2 cut(s) 323, 324
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 6 cut(s) 217, 608, 638, 684, 872, 996
AjnI CCWGG 3 cut(s) 276, 472, 699
AluBI AGCT 6 cut(s) 213, 293, 370, 583, 634, 773
AluI AGCT 6 cut(s) 213, 293, 370, 583, 634, 773
Alw21I GWGCWC 2 cut(s) 295, 806
AlwI GGATC 1 cut(s) 991
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 5 cut(s) 58, 223, 940, 947, 1039
ApeKI GCWGC 2 cut(s) 550, 824
ApoI RAATTY 2 cut(s) 339, 725
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 4 cut(s) 314, 384, 406, 816
AsuC2I CCSGG 2 cut(s) 167, 324
AsuHPI GGTGA 3 cut(s) 7, 61, 1094
AsuII TTCGAA 2 cut(s) 266, 365
AvaII GGWCC 4 cut(s) 314, 384, 406, 816
AxyI CCTNAGG 1 cut(s) 944
BaeI ACNNNNGTAYC 4 cut(s) 636, 669, 834, 867
BalI TGGCCA 1 cut(s) 1041
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 3 cut(s) 306, 716, 885
Bbv12I GWGCWC 2 cut(s) 295, 806
BbvI GCAGC 2 cut(s) 537, 836
BccI CCATC 2 cut(s) 1028, 1050
BceAI ACGGC 2 cut(s) 139, 322
BciT130I CCWGG 3 cut(s) 278, 474, 701
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 2 cut(s) 167, 324
BfaI CTAG 1 cut(s) 930
BfmI CTRYAG 2 cut(s) 735, 1107
BfoI RGCGCY 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 640
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 1 cut(s) 748
BisI GCNGC 4 cut(s) 85, 110, 551, 825
BlsI GCNGC 4 cut(s) 86, 111, 552, 826
Bme1390I CCNGG 5 cut(s) 167, 278, 324, 474, 701
Bme18I GGWCC 4 cut(s) 314, 384, 406, 816
BmgT120I GGNCC 4 cut(s) 314, 384, 406, 816
BmiI GGNNCC 2 cut(s) 316, 471
BmrFI CCNGG 5 cut(s) 167, 278, 324, 474, 701
BmrI ACTGGG 2 cut(s) 972, 1012
BmuI ACTGGG 2 cut(s) 972, 1012
BpiI GAAGAC 3 cut(s) 306, 716, 885
Bpu14I TTCGAA 2 cut(s) 266, 365
BpuMI CCSGG 2 cut(s) 167, 324
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 82, 165, 323, 473, 699
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 324
Bse118I RCCGGY 2 cut(s) 221, 386
Bse1I ACTGG 4 cut(s) 408, 978, 1007, 1103
Bse21I CCTNAGG 1 cut(s) 944
Bse3DI GCAATG 1 cut(s) 818
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 3 cut(s) 278, 474, 701
BseDI CCNNGG 5 cut(s) 82, 165, 323, 473, 699
BseGI GGATG 3 cut(s) 537, 859, 913
BseLI CCNNNNNNNGG 2 cut(s) 323, 324
BseMI GCAATG 1 cut(s) 818
BseMII CTCAG 4 cut(s) 371, 449, 654, 798
BseNI ACTGG 4 cut(s) 408, 978, 1007, 1103
BseRI GAGGAG 6 cut(s) 106, 109, 127, 533, 680, 1100
BseXI GCAGC 2 cut(s) 537, 836
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 4 cut(s) 35, 47, 84, 197
BshFI GGCC 5 cut(s) 60, 225, 942, 949, 1041
BsiHKAI GWGCWC 2 cut(s) 295, 806
BsiSI CCGG 6 cut(s) 167, 222, 246, 296, 323, 387
BslFI GGGAC 2 cut(s) 112, 300
BslI CCNNNNNNNGG 2 cut(s) 323, 324
BsmFI GGGAC 2 cut(s) 112, 300
BsnI GGCC 5 cut(s) 60, 225, 942, 949, 1041
Bsp119I TTCGAA 2 cut(s) 266, 365
Bsp1286I GDGCHC 2 cut(s) 295, 806
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 6 cut(s) 190, 484, 534, 748, 932, 983
BspANI GGCC 5 cut(s) 60, 225, 942, 949, 1041
BspCNI CTCAG 4 cut(s) 370, 448, 655, 799
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 4 cut(s) 35, 47, 84, 197
BspLI GGNNCC 2 cut(s) 316, 471
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 1 cut(s) 991
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 2 cut(s) 266, 365
BsrDI GCAATG 1 cut(s) 818
BsrFI RCCGGY 2 cut(s) 221, 386
BsrI ACTGG 4 cut(s) 408, 978, 1007, 1103
BssAI RCCGGY 2 cut(s) 221, 386
BssECI CCNNGG 5 cut(s) 82, 165, 323, 473, 699
BssMI GATC 6 cut(s) 190, 484, 534, 748, 932, 983
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 278, 474, 701
Bst4CI ACNGT 3 cut(s) 380, 457, 1108
Bst6I CTCTTC 3 cut(s) 17, 681, 792
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 2 cut(s) 266, 365
BstC8I GCNNGC 1 cut(s) 951
BstDEI CTNAG 6 cut(s) 357, 435, 488, 663, 807, 944
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 3 cut(s) 537, 859, 913
BstFNI CGCG 4 cut(s) 35, 47, 84, 197
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 6 cut(s) 193, 487, 537, 751, 935, 986
BstMBI GATC 6 cut(s) 190, 484, 534, 748, 932, 983
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 3 cut(s) 278, 474, 701
BstNSI RCATGY 2 cut(s) 427, 449
BstSCI CCNGG 5 cut(s) 165, 276, 322, 472, 699
BstSFI CTRYAG 2 cut(s) 735, 1107
BstUI CGCG 4 cut(s) 35, 47, 84, 197
BstV1I GCAGC 2 cut(s) 537, 836
BstV2I GAAGAC 3 cut(s) 306, 716, 885
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 944
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 5 cut(s) 60, 225, 942, 949, 1041
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 3 cut(s) 537, 859, 913
BtsIMutI CAGTG 5 cut(s) 401, 453, 804, 985, 1104
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 1 cut(s) 951
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 2 cut(s) 221, 386
Cfr13I GGNCC 4 cut(s) 314, 384, 406, 816
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 4 cut(s) 36, 41, 53, 76
Csp6I GTAC 3 cut(s) 620, 843, 1056
CviAII CATG 4 cut(s) 413, 424, 446, 875
CviQI GTAC 3 cut(s) 620, 843, 1056
DdeI CTNAG 6 cut(s) 357, 435, 488, 663, 807, 944
DpnI GATC 6 cut(s) 192, 486, 536, 750, 934, 985
DpnII GATC 6 cut(s) 190, 484, 534, 748, 932, 983
EaeI YGGCCR 2 cut(s) 58, 1039
Eam1104I CTCTTC 3 cut(s) 17, 681, 792
EarI CTCTTC 3 cut(s) 17, 681, 792
EciI GGCGGA 2 cut(s) 96, 324
Ecl136II GAGCTC 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 295
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 4 cut(s) 314, 384, 406, 816
Eco53kI GAGCTC 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 944
EcoICRI GAGCTC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 276, 472, 699
EcoRV GATATC 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 4 cut(s) 416, 427, 449, 878
FaiI YATR 5 cut(s) 398, 414, 425, 447, 876
FaqI GGGAC 2 cut(s) 112, 300
FatI CATG 4 cut(s) 412, 423, 445, 874
FauI CCCGC 2 cut(s) 80, 200
Fnu4HI GCNGC 4 cut(s) 85, 110, 551, 825
FokI GGATG 3 cut(s) 544, 866, 920
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 4 cut(s) 85, 110, 551, 825
FspBI CTAG 1 cut(s) 930
GlaI GCGC 1 cut(s) 171
GluI GCNGC 4 cut(s) 85, 110, 551, 825
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 5 cut(s) 60, 225, 942, 949, 1041
HapII CCGG 6 cut(s) 167, 222, 246, 296, 323, 387
HgaI GACGC 4 cut(s) 36, 41, 53, 76
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 416, 427, 449, 878
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 2 cut(s) 591, 672
HindII GTYRAC 2 cut(s) 591, 672
HindIII AAGCTT 2 cut(s) 368, 632
HinfI GANTC 8 cut(s) 143, 180, 249, 492, 668, 786, 1073, 1088
HpaII CCGG 6 cut(s) 167, 222, 246, 296, 323, 387
HphI GGTGA 3 cut(s) 7, 61, 1094
Hpy166II GTNNAC 2 cut(s) 591, 672
Hpy188III TCNNGA 2 cut(s) 217, 296
Hpy8I GTNNAC 2 cut(s) 591, 672
Hpy99I CGWCG 8 cut(s) 35, 47, 52, 92, 160, 245, 308, 356
HpyAV CCTTC 4 cut(s) 106, 140, 171, 1073
HpyCH4III ACNGT 3 cut(s) 380, 457, 1108
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 4 cut(s) 504, 569, 628, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 6 cut(s) 357, 435, 488, 663, 807, 944
HpySE526I ACGT 1 cut(s) 960
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 416, 427, 449, 878
HspAI GCGC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 295
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 6 cut(s) 190, 484, 534, 748, 932, 983
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 6 cut(s) 109, 210, 279, 290, 298, 520
Lsp1109I GCAGC 2 cut(s) 537, 836
MaeI CTAG 1 cut(s) 930
MaeII ACGT 1 cut(s) 960
MalI GATC 6 cut(s) 192, 486, 536, 750, 934, 985
MboI GATC 6 cut(s) 190, 484, 534, 748, 932, 983
MboII GAAGA 6 cut(s) 4, 311, 668, 721, 809, 890
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 295, 806
MlsI TGGCCA 1 cut(s) 1041
MluCI AATT 6 cut(s) 200, 257, 339, 464, 524, 725
MluI ACGCGT 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 1041
MlyI GAGTC 4 cut(s) 189, 501, 677, 1097
MmeI TCCRAC 2 cut(s) 49, 362
Mox20I TGGCCA 1 cut(s) 1041
MroI TCCGGA 1 cut(s) 295
MscI TGGCCA 1 cut(s) 1041
MseI TTAA 1 cut(s) 782
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 1 cut(s) 1041
MspA1I CMGCKG 2 cut(s) 84, 773
MspI CCGG 6 cut(s) 167, 222, 246, 296, 323, 387
MspR9I CCNGG 5 cut(s) 167, 278, 324, 474, 701
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 3 cut(s) 278, 474, 701
MvnI CGCG 4 cut(s) 35, 47, 84, 197
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 2 cut(s) 167, 324
NdeII GATC 6 cut(s) 190, 484, 534, 748, 932, 983
NlaIII CATG 4 cut(s) 416, 427, 449, 878
NlaIV GGNNCC 2 cut(s) 316, 471
NmeAIII GCCGAG 2 cut(s) 36, 324
NspI RCATGY 2 cut(s) 427, 449
NspV TTCGAA 2 cut(s) 266, 365
PceI AGGCCT 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 4 cut(s) 143, 249, 786, 1073
PkrI GCNGC 4 cut(s) 86, 111, 552, 826
PleI GAGTC 4 cut(s) 188, 500, 676, 1096
PpsI GAGTC 4 cut(s) 188, 500, 676, 1096
PpuMI RGGWCCY 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 276, 472, 699
PspGI CCWGG 3 cut(s) 276, 472, 699
PspN4I GGNNCC 2 cut(s) 316, 471
PspPI GGNCC 4 cut(s) 314, 384, 406, 816
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 1 cut(s) 739
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 3 cut(s) 621, 844, 1057
RsaNI GTAC 3 cut(s) 620, 843, 1056
RseI CAYNNNNRTG 1 cut(s) 996
SacI GAGCTC 1 cut(s) 295
SacII CCGCGG 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 4 cut(s) 85, 110, 551, 825
Sau3AI GATC 6 cut(s) 190, 484, 534, 748, 932, 983
Sau96I GGNCC 4 cut(s) 314, 384, 406, 816
SchI GAGTC 4 cut(s) 189, 501, 677, 1097
ScrFI CCNGG 5 cut(s) 167, 278, 324, 474, 701
SduI GDGCHC 2 cut(s) 295, 806
SfcI CTRYAG 2 cut(s) 735, 1107
Sfr303I CCGCGG 1 cut(s) 85
SfuI TTCGAA 2 cut(s) 266, 365
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 4 cut(s) 314, 384, 406, 816
SmiMI CAYNNNNRTG 1 cut(s) 996
Sse9I AATT 6 cut(s) 200, 257, 339, 464, 524, 725
SseBI AGGCCT 1 cut(s) 942
SspMI CTAG 1 cut(s) 930
SstI GAGCTC 1 cut(s) 295
StuI AGGCCT 1 cut(s) 942
StyD4I CCNGG 5 cut(s) 165, 276, 322, 472, 699
TaaI ACNGT 3 cut(s) 380, 457, 1108
TaiI ACGT 1 cut(s) 963
TaqI TCGA 6 cut(s) 266, 365, 459, 509, 1061, 1091
TasI AATT 6 cut(s) 200, 257, 339, 464, 524, 725
TatI WGTACW 1 cut(s) 619
TauI GCSGC 2 cut(s) 87, 112
TfiI GAWTC 4 cut(s) 143, 249, 786, 1073
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 5 cut(s) 408, 460, 811, 985, 1111
TseI GCWGC 2 cut(s) 550, 824
TspDTI ATGAA 4 cut(s) 351, 668, 810, 891
TspGWI ACGGA 2 cut(s) 229, 303
TspRI CASTG 5 cut(s) 408, 460, 811, 985, 1111
VpaK11BI GGWCC 4 cut(s) 314, 384, 406, 816
XapI RAATTY 2 cut(s) 339, 725
XceI RCATGY 2 cut(s) 427, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XspI CTAG 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.