Rmu_sc0000146.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000146.1
OG0003259
Physical Location & Seq
Forward (+)
71687 .. 72317
631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000146.1_g000024.1.cds

Sequence Viewer

Length: 426 bp
atggatatgctcacttgtcctctgtccttacttgtggcctcgctggactttccatcgtcgtcatccccccttccctcctccgattctcaaccttcaccgtcgccggcgctcttgggacttcgaaacaatcttgcggaattgggtaggagcttcaagaccggcctcttgtttctctccttcgccgaaatctccaaattggcttcgaacttgatgccagtttggaatggagcttcggaagaagacgacggcggttccgtgccaagaattaccaatgaaattctcggcttcgtcgctcagattttgaagctttcggactattggacccactttcctataccactggaccaccatgaagttggaatggaaactgagcagagggaacctatagcagtagaactggaaggaggtggccgacatcgtgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

141

Amino Acids

15.26

Weight (kDa)

4.71

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 249
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 276
AgsI TTSAA 2 cut(s) 154, 304
AluBI AGCT 3 cut(s) 150, 230, 307
AluI AGCT 3 cut(s) 150, 230, 307
AoxI GGCC 3 cut(s) 36, 160, 409
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 321, 343
AsuHPI GGTGA 1 cut(s) 87
AsuII TTCGAA 2 cut(s) 121, 203
AvaII GGWCC 2 cut(s) 321, 343
BbsI GAAGAC 1 cut(s) 246
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 321, 343
BmgT120I GGNCC 2 cut(s) 321, 343
BmiI GGNNCC 3 cut(s) 253, 323, 381
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 246
Bpu14I TTCGAA 2 cut(s) 121, 203
Bse118I RCCGGY 2 cut(s) 103, 158
Bse1I ACTGG 3 cut(s) 215, 345, 402
BseGI GGATG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 308, 360
BseNI ACTGG 3 cut(s) 215, 345, 402
BseRI GAGGAG 1 cut(s) 67
BshFI GGCC 3 cut(s) 38, 162, 411
BsiSI CCGG 2 cut(s) 104, 159
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 3 cut(s) 38, 162, 411
Bsp119I TTCGAA 2 cut(s) 121, 203
BspACI CCGC 2 cut(s) 134, 249
BspANI GGCC 3 cut(s) 38, 162, 411
BspCNI CTCAG 2 cut(s) 307, 361
BspLI GGNNCC 3 cut(s) 253, 323, 381
BspT104I TTCGAA 2 cut(s) 121, 203
BsrFI RCCGGY 2 cut(s) 103, 158
BsrI ACTGG 3 cut(s) 215, 345, 402
BssAI RCCGGY 2 cut(s) 103, 158
Bst4CI ACNGT 1 cut(s) 99
BstBI TTCGAA 2 cut(s) 121, 203
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 294, 369
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuRI GGCC 3 cut(s) 38, 162, 411
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 2 cut(s) 103, 158
Cfr13I GGNCC 2 cut(s) 321, 343
CviAII CATG 1 cut(s) 350
CviJI RGCY 8 cut(s) 38, 150, 162, 200, 230, 285, 307, 411
CviKI_1 RGCY 8 cut(s) 38, 150, 162, 200, 230, 285, 307, 411
DdeI CTNAG 2 cut(s) 294, 369
EaeI YGGCCR 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 321, 343
FaeI CATG 1 cut(s) 353
FaiI YATR 4 cut(s) 8, 335, 351, 386
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 349
FokI GGATG 1 cut(s) 49
GlaI GCGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 38, 162, 411
HapII CCGG 2 cut(s) 104, 159
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 104, 159
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 82, 235, 297, 313
Hpy188III TCNNGA 1 cut(s) 154
Hpy99I CGWCG 4 cut(s) 61, 103, 248, 293
HpyAV CCTTC 4 cut(s) 80, 102, 187, 395
HpyCH4III ACNGT 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 294, 369
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 147, 227
LpnPI CCDG 6 cut(s) 29, 117, 172, 228, 326, 383
LweI GCATC 1 cut(s) 201
MboII GAAGA 2 cut(s) 248, 251
MluCI AATT 4 cut(s) 137, 194, 264, 276
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 7 cut(s) 30, 49, 85, 88, 173, 369, 398
MreI CGCCGGCG 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 103
MspI CCGG 2 cut(s) 104, 159
NaeI GCCGGC 1 cut(s) 105
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 3 cut(s) 253, 323, 381
NmeAIII GCCGAG 1 cut(s) 261
NspV TTCGAA 2 cut(s) 121, 203
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 253, 323, 381
PspPI GGNCC 2 cut(s) 321, 343
Sau96I GGNCC 2 cut(s) 321, 343
SetI ASST 6 cut(s) 94, 152, 232, 309, 385, 409
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 2 cut(s) 121, 203
SgrAI CRCCGGYG 1 cut(s) 103
SinI GGWCC 2 cut(s) 321, 343
Sse9I AATT 4 cut(s) 137, 194, 264, 276
SsiI CCGC 2 cut(s) 134, 249
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 121, 203
TasI AATT 4 cut(s) 137, 194, 264, 276
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 1 cut(s) 345
TspDTI ATGAA 2 cut(s) 288, 366
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 321, 343
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.