AT2G16860

SYF2 splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002812
Physical Location & Seq
Reverse (-)
7303812 .. 7306675
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16860.2

Sequence Viewer

Length: 897 bp
ATGGTTAGTGAGAGAAGAGTGCATCCGGATTGTATAAACGCTTCAAATCCTTATCACGAGTGTGTCGAGTATTGCTTTAAGAAAATCGCTGAAGCAAAGGCCAGATTCGAGAAGCAGAACACTGGATTAGCTAAAGTTCACGAGCAGACGAGGGAGCCGCTCGATGATAAAAGAATAGAGGAAGATAGTTCAGAAGAAGAAGAGGAGGAAGAGGATAACCAAGAACCTCAAGTAGATGTAACTCAACTTACAGGGAGACAAAAGAAGTTGTTTGAGTTGAGACTTAAGATGAATGAAGCAAGAAAATCCAATCAGACGGATGTCGGGAGTGAAAAGAAGAAAATGGAAGCACCAACAGAGACAAAAGGAATCTCAAAACAGAAATGGTTGGAGGGGAGGAAGAAAAAGATTGGGAAACTTCTTGATGCTAATGGTTTAGATATGACACAGGCTTATATGCTCGATACTCAAGAAGCAGCTGAATCAAAATACAAAAAATGGGAAAAGGAACCTACGCCTGCGGGTTGGGATGTCTTTAACCAGAAGACGTTATACAACGCATACAAGAAACGGACAAAGAACATTCAGGTTGATCTGGAGGAGTATAACAGAATGAGAGCAGCTGATCCAGAGTTTTACCGTGAGGCCTCAAGCTTGCAATATGGAAAGGCTCCAAAAACTTCGCAAGATAAGATAGATAAGATGGCAAAAGAGCTCTTAGACAGAGAGCAAAAGCGACAAGAGTTTAGCAGGAGGAGGAAGTTCCGGGAAGAGAAGGATATCGATTCCATCAACGACAGAAACGAGCATTTCAACAAGAAAATCGAGCGTGCGTTTGGGAAATACACGCTGGAGATCAAAAACAACTTGGAACGAGGAACTGCATTACCCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

298

Amino Acids

35.17

Weight (kDa)

8.16

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYF2 PF08231 144 - 291 8.6e-37 SYF2 splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 2 cut(s) 158, 521
AclWI GGATC 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 111
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 45, 814
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 5 cut(s) 131, 479, 623, 654, 715
AluI AGCT 5 cut(s) 131, 479, 623, 654, 715
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 3 cut(s) 250, 274, 353
AlwI GGATC 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 2 cut(s) 99, 645
ApeKI GCWGC 2 cut(s) 476, 620
AsuC2I CCSGG 1 cut(s) 767
BanII GRGCYC 1 cut(s) 717
BarI GAAGNNNNNNTAC 4 cut(s) 25, 57, 536, 568
BauI CACGAG 2 cut(s) 56, 140
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 488, 632
BccI CCATC 2 cut(s) 697, 797
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 3 cut(s) 250, 274, 353
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 158, 477, 621
BlsI GCNGC 3 cut(s) 159, 478, 622
Bme1390I CCNGG 1 cut(s) 767
BmiI GGNNCC 3 cut(s) 156, 510, 672
BmrFI CCNGG 1 cut(s) 767
BmsI GCATC 2 cut(s) 31, 415
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 551
BpmI CTGGAG 2 cut(s) 617, 872
BpuEI CTTGAG 3 cut(s) 213, 453, 634
BpuMI CCSGG 1 cut(s) 767
Bsa29I ATCGAT 1 cut(s) 783
BsaWI WCCGGW 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 127
BseAI TCCGGA 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 783
BseGI GGATG 3 cut(s) 22, 325, 535
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 3 cut(s) 218, 614, 769
BseXI GCAGC 2 cut(s) 488, 632
BshFI GGCC 2 cut(s) 101, 647
BshVI ATCGAT 1 cut(s) 783
BsiHKAI GWGCWC 1 cut(s) 717
BsiSI CCGG 2 cut(s) 26, 766
BsmAI GTCTC 3 cut(s) 250, 274, 353
BsnI GGCC 2 cut(s) 101, 647
Bsp1286I GDGCHC 1 cut(s) 717
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 592, 625, 855
BspACI CCGC 2 cut(s) 158, 521
BspANI GGCC 2 cut(s) 101, 647
BspDI ATCGAT 1 cut(s) 783
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 156, 510, 672
BspPI GGATC 1 cut(s) 620
BspTI CTTAAG 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 127
BssMI GATC 3 cut(s) 592, 625, 855
BssSI CACGAG 2 cut(s) 56, 140
Bst2BI CACGAG 2 cut(s) 56, 140
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 4 cut(s) 10, 195, 204, 765
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 519, 656, 831
BstDEI CTNAG 1 cut(s) 718
BstF5I GGATG 3 cut(s) 22, 325, 535
BstKTI GATC 3 cut(s) 595, 628, 858
BstMAI GTCTC 3 cut(s) 250, 274, 353
BstMBI GATC 3 cut(s) 592, 625, 855
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 765
BstV1I GCAGC 2 cut(s) 488, 632
BstV2I GAAGAC 1 cut(s) 551
Bsu15I ATCGAT 1 cut(s) 783
BsuRI GGCC 2 cut(s) 101, 647
BsuTUI ATCGAT 1 cut(s) 783
BtsCI GGATG 3 cut(s) 22, 325, 535
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 519, 656, 831
ClaI ATCGAT 1 cut(s) 783
DdeI CTNAG 1 cut(s) 718
DpnI GATC 3 cut(s) 594, 627, 857
DpnII GATC 3 cut(s) 592, 625, 855
Eam1104I CTCTTC 4 cut(s) 10, 195, 204, 765
EarI CTCTTC 4 cut(s) 10, 195, 204, 765
Ecl136II GAGCTC 1 cut(s) 715
Eco147I AGGCCT 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 717
Eco32I GATATC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 715
EcoRV GATATC 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 717
FaiI YATR 8 cut(s) 35, 443, 456, 458, 553, 562, 606, 663
FauI CCCGC 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 158, 477, 621
FokI GGATG 3 cut(s) 9, 332, 542
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 3 cut(s) 158, 477, 621
GluI GCNGC 3 cut(s) 158, 477, 621
GsuI CTGGAG 2 cut(s) 617, 872
HaeIII GGCC 2 cut(s) 101, 647
HapII CCGG 2 cut(s) 26, 766
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 4 cut(s) 105, 369, 482, 785
HpaII CCGG 2 cut(s) 26, 766
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 193, 315
Hpy188III TCNNGA 9 cut(s) 26, 56, 109, 140, 325, 422, 470, 596, 629
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 769
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 3 cut(s) 22, 658, 884
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 1 cut(s) 548
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 592, 625, 855
LmnI GCTCC 2 cut(s) 154, 676
Lsp1109I GCAGC 2 cut(s) 488, 632
LweI GCATC 2 cut(s) 31, 415
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 594, 627, 857
MbiI CCGCTC 1 cut(s) 160
MboI GATC 3 cut(s) 592, 625, 855
MhlI GDGCHC 1 cut(s) 717
MmeI TCCRAC 1 cut(s) 369
MroI TCCGGA 1 cut(s) 25
MseI TTAA 3 cut(s) 78, 285, 537
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 2 cut(s) 479, 623
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 26, 766
MspR9I CCNGG 1 cut(s) 767
NciI CCSGG 1 cut(s) 767
NdeII GATC 3 cut(s) 592, 625, 855
NlaIV GGNNCC 3 cut(s) 156, 510, 672
OliI CACNNNNGTG 1 cut(s) 60
PceI AGGCCT 1 cut(s) 647
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 801
PfeI GAWTC 4 cut(s) 105, 369, 482, 785
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 3 cut(s) 159, 478, 622
PshAI GACNNNNGTC 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 717
PspN4I GGNNCC 3 cut(s) 156, 510, 672
PvuII CAGCTG 2 cut(s) 479, 623
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 78, 285, 537
SatI GCNGC 3 cut(s) 158, 477, 621
Sau3AI GATC 3 cut(s) 592, 625, 855
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 1 cut(s) 717
SetI ASST 9 cut(s) 133, 229, 481, 514, 551, 591, 625, 656, 717
SfaNI GCATC 2 cut(s) 31, 415
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 4 cut(s) 228, 284, 468, 649
SmoI CTYRAG 4 cut(s) 228, 284, 468, 649
SseBI AGGCCT 1 cut(s) 647
SsiI CCGC 2 cut(s) 158, 521
SstI GAGCTC 1 cut(s) 717
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 641
TaiI ACGT 1 cut(s) 551
TaqI TCGA 6 cut(s) 66, 108, 162, 462, 783, 825
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 4 cut(s) 105, 369, 482, 785
Tru1I TTAA 3 cut(s) 78, 285, 537
Tru9I TTAA 3 cut(s) 78, 285, 537
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 476, 620
TspDTI ATGAA 2 cut(s) 305, 309
TspGWI ACGGA 2 cut(s) 332, 586
TspRI CASTG 1 cut(s) 127
Vha464I CTTAAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.