Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Forward (+)

49312410 .. 49314494

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCTGATGAAGGAAGAGTGCACCCGGATTGCAGGAATGCATCCAATCCCTACCATGAATGCAGCGATTTTTGCTTCAAAGTTATTGCTGAAACCAAAGCTCGGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTGGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTCAGCAAGAGGAAGATCTAGATAGACCAGCAGAGACTGATGAACATGCTGGTGATGGTGATGAGCCTCCTGTTGATGAGGAGGAGAATATGGAAGGAGACTTCACAAAGTTCACAGGGAGGAAGAAAAAGTTATGGGAATTAAGGATGAAGATGATGATTCCTGGTATGGTTTTGGTTGATGCTTTTGCTTTTGGTCAAATACTTGGATTCTACAAGTGCAGGGGCTATTTCAGCATTCTGTACCGCTGCTTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

144

Amino Acids

16.26

Weight (kDa)

4.92

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	132, 416
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	2 cut(s)	128, 209
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	63, 170, 420
AspLEI	GCGC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	236, 242
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	75, 157, 407
BccI	CCATC	2 cut(s)	100, 221
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	1 cut(s)	191
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	64, 171, 421
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	65, 172, 422
Bme1390I	CCNGG	2 cut(s)	26, 336
BmrFI	CCNGG	2 cut(s)	26, 336
BmsI	GCATC	2 cut(s)	50, 343
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	336
BseGI	GGATG	3 cut(s)	41, 111, 324
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	266, 269
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	75, 157, 407
BsgI	GTGCAG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	3 cut(s)	43, 65, 408
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	109, 187
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	130
BssMI	GATC	2 cut(s)	109, 187
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	41, 111, 324
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	112, 190
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	2 cut(s)	109, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 405, 426
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	24, 334
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	75, 157, 407
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	41, 111, 324
Cac8I	GCNNGC	1 cut(s)	425
CaiI	CAGNNNCTG	2 cut(s)	128, 209
CfoI	GCGC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	131, 415
CviAII	CATG	2 cut(s)	56, 218
CviJI	RGCY	4 cut(s)	101, 170, 238, 399
CviKI_1	RGCY	4 cut(s)	101, 170, 238, 399
CviQI	GTAC	2 cut(s)	131, 415
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	111, 189
DpnII	GATC	2 cut(s)	109, 187
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	2 cut(s)	59, 221
FaiI	YATR	5 cut(s)	57, 219, 263, 307, 341
FatI	CATG	2 cut(s)	55, 217
Fnu4HI	GCNGC	3 cut(s)	64, 171, 421
FokI	GGATG	3 cut(s)	28, 118, 331
Fsp4HI	GCNGC	3 cut(s)	64, 171, 421
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	3 cut(s)	64, 171, 421
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	59, 221
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	125, 331, 381
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	236, 242
Hpy166II	GTNNAC	2 cut(s)	22, 285
Hpy188I	TCNGA	3 cut(s)	7, 105, 124
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	22, 285
HpyAV	CCTTC	2 cut(s)	5, 260
HpyCH4V	TGCA	5 cut(s)	22, 33, 41, 63, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 405, 426
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	59, 221
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	109, 187
LpnPI	CCDG	9 cut(s)	19, 39, 207, 213, 255, 273, 321, 348, 379
Lsp1109I	GCAGC	3 cut(s)	75, 157, 407
LweI	GCATC	2 cut(s)	50, 343
MaeI	CTAG	1 cut(s)	191
MalI	GATC	2 cut(s)	111, 189
MboI	GATC	2 cut(s)	109, 187
MboII	GAAGA	4 cut(s)	27, 197, 307, 334
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	161, 311
MnlI	CCTC	6 cut(s)	160, 175, 244, 247, 249, 285
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 336
Mva1269I	GAATGC	3 cut(s)	43, 65, 408
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	72, 405, 426
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	109, 187
NlaIII	CATG	2 cut(s)	59, 221
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	221
PctI	GAATGC	3 cut(s)	43, 65, 408
PfeI	GAWTC	3 cut(s)	125, 331, 381
PkrI	GCNGC	3 cut(s)	65, 172, 422
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PstNI	CAGNNNCTG	2 cut(s)	128, 209
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	132, 416
RsaNI	GTAC	2 cut(s)	131, 415
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	64, 171, 421
Sau3AI	GATC	2 cut(s)	109, 187
ScrFI	CCNGG	2 cut(s)	26, 336
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	50, 343
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	161, 311
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	24, 334
TasI	AATT	2 cut(s)	161, 311
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	125, 331, 381
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseI	GCWGC	3 cut(s)	63, 170, 420
TspDTI	ATGAA	4 cut(s)	24, 72, 228, 335
VneI	GTGCAC	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.