Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Forward (+)

51097177 .. 51098583

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCTGATGAAGGAAGAGTGCACCCGGATTGCAGGAATGCATCCAATCCCTACCATGAATGCAGTGAGTTTTGCTTCAAAGTTATTGCTGAAACCAAAGCTCGGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTAGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTCAGCAAGAGGAAGATCTAGATAGACCATCAGAGACTGATGAACATGCTGGTGATGGTGATGAGCCTCATGTTGACGAGGAGGAGAATATGGAAGGAGACTTCACGAAGTTCACAGGGAGGAAGAAAAAGTTGTGGGAATTAAGGATGATCGAAGATGGTAAGGAAAAAAGAATTGGTAAACTTCTGGATGCAAATGGTTTGGATATGAAAAGCGTTTACATGCTAGATACACAAGAGATGGCAGTGTCAAAGTACAAGAAATGGGAAAAGGATCCTGCCCCATATGGCTGGGATGGTATGCTCCAGTACTTCTGCTCGTTAATTATTGTTTCTTTTATTGTTTTGGTTTTAGTTCAATCTAGTCTGTTTATGATTGATAATGATGGTACACACATGATTTTCATGTTCCACTGTTCCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

199

Amino Acids

22.74

Weight (kDa)

4.77

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	117, 440, 453
AfaI	GTAC	4 cut(s)	132, 428, 482, 562
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	79, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	117, 440, 453
AlwNI	CAGNNNCTG	2 cut(s)	128, 209
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	236, 242
BaeGI	GKGCMC	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	7 cut(s)	100, 208, 221, 323, 406, 461, 551
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	3 cut(s)	191, 398, 534
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	50, 352
BpmI	CTGGAG	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	5 cut(s)	41, 111, 324, 367, 472
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	2 cut(s)	266, 269
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	2 cut(s)	43, 65
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	109, 187, 321, 445
Bsp1720I	GCTNAGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	117, 440, 453
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	109, 187, 321, 445
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	5 cut(s)	41, 111, 324, 367, 472
BstKTI	GATC	4 cut(s)	112, 190, 324, 448
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	4 cut(s)	109, 187, 321, 445
BstNSI	RCATGY	2 cut(s)	221, 397
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	2 cut(s)	187, 445
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	2 cut(s)	187, 445
BtsCI	GGATG	5 cut(s)	41, 111, 324, 367, 472
BtsI	GCAGTG	2 cut(s)	70, 423
BtsIMutI	CAGTG	3 cut(s)	70, 423, 583
CaiI	CAGNNNCTG	2 cut(s)	128, 209
Csp6I	GTAC	4 cut(s)	131, 427, 481, 561
CviAII	CATG	6 cut(s)	56, 218, 242, 394, 568, 577
CviJI	RGCY	4 cut(s)	101, 170, 238, 462
CviKI_1	RGCY	4 cut(s)	101, 170, 238, 462
CviQI	GTAC	4 cut(s)	131, 427, 481, 561
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	4 cut(s)	111, 189, 323, 447
DpnII	GATC	4 cut(s)	109, 187, 321, 445
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	6 cut(s)	59, 221, 245, 397, 571, 580
FatI	CATG	6 cut(s)	55, 217, 241, 393, 567, 576
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	5 cut(s)	28, 118, 331, 374, 479
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	3 cut(s)	191, 398, 534
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	461
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	6 cut(s)	59, 221, 245, 397, 571, 580
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	236, 242
Hpy166II	GTNNAC	6 cut(s)	22, 247, 285, 353, 391, 563
Hpy188I	TCNGA	4 cut(s)	7, 105, 124, 205
Hpy188III	TCNNGA	3 cut(s)	191, 277, 359
Hpy8I	GTNNAC	6 cut(s)	22, 247, 285, 353, 391, 563
HpyAV	CCTTC	2 cut(s)	5, 260
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	5 cut(s)	22, 33, 41, 63, 365
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	59, 221, 245, 397, 571, 580
Kzo9I	GATC	4 cut(s)	109, 187, 321, 445
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	8 cut(s)	19, 39, 207, 273, 344, 448, 462, 491
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	50, 352
MaeI	CTAG	3 cut(s)	191, 398, 534
MalI	GATC	4 cut(s)	111, 189, 323, 447
MboI	GATC	4 cut(s)	109, 187, 321, 445
MboII	GAAGA	4 cut(s)	27, 197, 307, 338
MflI	RGATCY	2 cut(s)	187, 445
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	4 cut(s)	161, 311, 345, 495
MnlI	CCTC	6 cut(s)	160, 175, 244, 247, 249, 285
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	2 cut(s)	314, 494
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	43, 65
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	109, 187, 321, 445
NlaIII	CATG	6 cut(s)	59, 221, 245, 397, 571, 580
NlaIV	GGNNCC	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	2 cut(s)	221, 397
PctI	GAATGC	2 cut(s)	43, 65
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	447
PstNI	CAGNNNCTG	2 cut(s)	128, 209
PsuI	RGATCY	2 cut(s)	187, 445
RsaI	GTAC	4 cut(s)	132, 428, 482, 562
RsaNI	GTAC	4 cut(s)	131, 427, 481, 561
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	314, 494
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	109, 187, 321, 445
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	50, 352
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	161, 311, 345, 495
SspMI	CTAG	3 cut(s)	191, 398, 534
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	324
TasI	AATT	4 cut(s)	161, 311, 345, 495
TatI	WGTACW	3 cut(s)	130, 426, 480
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	314, 494
Tru9I	TTAA	2 cut(s)	314, 494
TscAI	CASTG	3 cut(s)	70, 423, 590
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	24, 72, 228, 395, 565
TspRI	CASTG	3 cut(s)	70, 423, 590
VneI	GTGCAC	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	221, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	3 cut(s)	191, 398, 534
ZrmI	AGTACT	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.