Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Forward (+)

6076914 .. 6078037

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTGATGAAGGAAGAGTGCACCCGGATTGCAGGAATGCATCCAATCCCTACCATGAATGCAGCAAGTTTTGCTTCACAGTTACTGCTGAAACCAAAGCTCTGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTGGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTAAGCAAGAGAAAGATCTAGATAGACCATCAGAGACTGATGAACATGCTGGTGATGGTGATGAGCCTCCTGTTGACGAGGAGGAGAATATGGAAGGAGACTTCACAAAGTTCACAGGGAGGAAGAAAAAGTTATGGGAATTAAGGATGAAGATGAATATGGCTAGGAAAGCAAATCAAAAGATATTGCAGCTGAAAAGAAAAGAATGGAACCTGCACAAGAATCAAGGGGCATTTCTAAACAAAAATGGCTTGAAGAGAGGAAAAAAAGAATTGGTAAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

152

Amino Acids

17.36

Weight (kDa)

8.37

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AclWI	GGATC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	427
AluBI	AGCT	2 cut(s)	101, 364
AluI	AGCT	2 cut(s)	101, 364
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	3 cut(s)	86, 128, 209
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	63, 170, 361
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	236, 242
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	75, 157, 373
BccI	CCATC	3 cut(s)	100, 208, 221
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	3 cut(s)	191, 336, 457
BfuAI	ACCTGC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	64, 171, 362
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	65, 172, 363
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	2 cut(s)	41, 324
BseJI	GATNNNNATC	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	266, 269
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	75, 157, 373
BsgI	GTGCAG	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	2 cut(s)	43, 65
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	109, 187
Bsp1720I	GCTNAGC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	383
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	130
BssMI	GATC	2 cut(s)	109, 187
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	10, 422
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	41, 324
BstKTI	GATC	2 cut(s)	112, 190
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	2 cut(s)	109, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 341
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	75, 157, 373
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	41, 324
BveI	ACCTGC	1 cut(s)	393
CaiI	CAGNNNCTG	3 cut(s)	86, 128, 209
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	2 cut(s)	56, 218
CviJI	RGCY	6 cut(s)	101, 170, 238, 335, 364, 423
CviKI_1	RGCY	6 cut(s)	101, 170, 238, 335, 364, 423
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	111, 189
DpnII	GATC	2 cut(s)	109, 187
Eam1104I	CTCTTC	2 cut(s)	10, 422
EarI	CTCTTC	2 cut(s)	10, 422
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	2 cut(s)	59, 221
FaiI	YATR	5 cut(s)	57, 219, 263, 307, 332
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	55, 217
Fnu4HI	GCNGC	3 cut(s)	64, 171, 362
FokI	GGATG	2 cut(s)	28, 331
Fsp4HI	GCNGC	3 cut(s)	64, 171, 362
FspBI	CTAG	3 cut(s)	191, 336, 457
GluI	GCNGC	3 cut(s)	64, 171, 362
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	59, 221
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	125, 394
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	236, 242
Hpy166II	GTNNAC	4 cut(s)	22, 247, 285, 451
Hpy188I	TCNGA	4 cut(s)	7, 105, 124, 205
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	4 cut(s)	22, 247, 285, 451
HpyAV	CCTTC	2 cut(s)	5, 260
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	22, 33, 41, 63, 361, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 341
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	59, 221
Kzo9I	GATC	2 cut(s)	109, 187
LpnPI	CCDG	6 cut(s)	19, 39, 207, 255, 273, 398
Lsp1109I	GCAGC	3 cut(s)	75, 157, 373
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	3 cut(s)	191, 336, 457
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	111, 189
MboI	GATC	2 cut(s)	109, 187
MboII	GAAGA	4 cut(s)	27, 307, 334, 439
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	161, 311, 443
MnlI	CCTC	6 cut(s)	160, 244, 247, 249, 285, 425
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	43, 65
MwoI	GCNNNNNNNGC	2 cut(s)	72, 341
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	109, 187
NlaIII	CATG	2 cut(s)	59, 221
NlaIV	GGNNCC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	221
PctI	GAATGC	2 cut(s)	43, 65
PfeI	GAWTC	2 cut(s)	125, 394
PkrI	GCNGC	3 cut(s)	65, 172, 363
PspN4I	GGNNCC	1 cut(s)	383
PstNI	CAGNNNCTG	3 cut(s)	86, 128, 209
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	64, 171, 362
Sau3AI	GATC	2 cut(s)	109, 187
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	103, 366, 387
SfaNI	GCATC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	161, 311, 443
SspMI	CTAG	3 cut(s)	191, 336, 457
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	3 cut(s)	161, 311, 443
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	125, 394
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseI	GCWGC	3 cut(s)	63, 170, 361
TspDTI	ATGAA	5 cut(s)	24, 72, 228, 335, 341
VneI	GTGCAC	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	3 cut(s)	191, 336, 457
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.