Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Reverse (-)

39673889 .. 39676947

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCTGATGAAGGAAGAGTGCACCGGGATTGCAGGAATGCATCCAATCCCTACCACGAATGCAGCGAGTTTTGCTTCAAAGTTATTGCTGAAACCAAAGCTCGGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTGGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTCAGCAAGAGGAAGATCTAGATAGACCGTCAGAGACTGATGAACATGCTGATGATGGTGATGAGCCTCCTGTTGAGGAGGAGGAGAATATGGAAGGAGACTTCACAAAGTTCACAGGGAGGAAGAAAAAGTTGTGGGAATTAAGGATGAAGATGAATAAGGCTAGGAAAGCAAATCAAACAGATATTGCAGCTGAAAAGAAAAGAATGGAACCTCCACAAGAATCAAGGGGCATTTCTAAACAAAAATGGCTTGAAGAGAGGAAAAAAAGAATTGGTAAACTTCTAGATGCAAATGGTTTGGATATGAAAACCGCTTACATGCTAGATACACAAGAGATGGCAGAGTCAAAGTACAAGAAATGGGAAAAGGATCCTGCCCCATATGGCTGGGATGGTATGCTCCAGTACCTCTGCTCGTTAATTATTGTTTCTTTTATTGTTTTGGTTTTAGTTCAATCTCGTCTGTTTCATATGATTGATAATGATGGTACACACGTGATTTTCATGTTCCACTGTTCCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

233

Amino Acids

26.91

Weight (kDa)

5.52

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	3 cut(s)	117, 539, 552
AcvI	CACGTG	1 cut(s)	670
AfaI	GTAC	4 cut(s)	132, 527, 581, 664
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	79, 428, 629
AluBI	AGCT	2 cut(s)	101, 365
AluI	AGCT	2 cut(s)	101, 365
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	117, 539, 552
AlwNI	CAGNNNCTG	2 cut(s)	128, 209
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	63, 170, 362
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BamHI	GGATCC	1 cut(s)	544
BbrPI	CACGTG	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	75, 157, 374
BccI	CCATC	5 cut(s)	100, 221, 505, 560, 653
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	4 cut(s)	191, 336, 458, 497
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	64, 171, 363
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	65, 172, 364
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	384, 546
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	50, 451
BpmI	CTGGAG	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	670
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	4 cut(s)	41, 111, 324, 571
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	3 cut(s)	263, 266, 269
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	75, 157, 374
BseYI	CCCAGC	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	2 cut(s)	43, 65
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	109, 187, 544
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	384, 546
BspPI	GGATC	3 cut(s)	117, 539, 552
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	109, 187, 544
Bst4CI	ACNGT	2 cut(s)	201, 689
Bst6I	CTCTTC	2 cut(s)	10, 423
BstAUI	TGTACA	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	670
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	41, 111, 324, 571
BstKTI	GATC	3 cut(s)	112, 190, 547
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	3 cut(s)	109, 187, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 341
BstNSI	RCATGY	2 cut(s)	221, 496
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	75, 157, 374
BstX2I	RGATCY	2 cut(s)	187, 544
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstYI	RGATCY	2 cut(s)	187, 544
BtsCI	GGATG	4 cut(s)	41, 111, 324, 571
BtsIMutI	CAGTG	1 cut(s)	685
CaiI	CAGNNNCTG	2 cut(s)	128, 209
Csp6I	GTAC	4 cut(s)	131, 526, 580, 663
CviAII	CATG	3 cut(s)	218, 493, 679
CviJI	RGCY	7 cut(s)	101, 170, 238, 335, 365, 424, 561
CviKI_1	RGCY	7 cut(s)	101, 170, 238, 335, 365, 424, 561
CviQI	GTAC	4 cut(s)	131, 526, 580, 663
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	111, 189, 546
DpnII	GATC	3 cut(s)	109, 187, 544
Eam1104I	CTCTTC	2 cut(s)	10, 423
EarI	CTCTTC	2 cut(s)	10, 423
Eco72I	CACGTG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	3 cut(s)	221, 496, 682
FatI	CATG	3 cut(s)	217, 492, 678
FauNDI	CATATG	2 cut(s)	556, 645
Fnu4HI	GCNGC	3 cut(s)	64, 171, 363
FokI	GGATG	4 cut(s)	28, 118, 331, 578
Fsp4HI	GCNGC	3 cut(s)	64, 171, 363
FspBI	CTAG	4 cut(s)	191, 336, 458, 497
GluI	GCNGC	3 cut(s)	64, 171, 363
GsaI	CCCAGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	560
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	3 cut(s)	221, 496, 682
HinfI	GANTC	3 cut(s)	125, 395, 518
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	22, 285, 452, 665
Hpy188I	TCNGA	4 cut(s)	7, 105, 124, 205
Hpy188III	TCNNGA	2 cut(s)	191, 458
Hpy8I	GTNNAC	4 cut(s)	22, 285, 452, 665
HpyAV	CCTTC	2 cut(s)	5, 260
HpyCH4III	ACNGT	2 cut(s)	201, 689
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	6 cut(s)	22, 33, 41, 63, 362, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 341
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	221, 496, 682
Kzo9I	GATC	3 cut(s)	109, 187, 544
LmnI	GCTCC	1 cut(s)	579
LpnPI	CCDG	7 cut(s)	19, 38, 255, 273, 547, 561, 590
Lsp1109I	GCAGC	3 cut(s)	75, 157, 374
LweI	GCATC	2 cut(s)	50, 451
MaeI	CTAG	4 cut(s)	191, 336, 458, 497
MaeII	ACGT	1 cut(s)	669
MalI	GATC	3 cut(s)	111, 189, 546
MboI	GATC	3 cut(s)	109, 187, 544
MboII	GAAGA	5 cut(s)	27, 197, 307, 334, 440
MflI	RGATCY	2 cut(s)	187, 544
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	4 cut(s)	161, 311, 444, 594
MlyI	GAGTC	1 cut(s)	527
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	2 cut(s)	314, 593
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	43, 65
MwoI	GCNNNNNNNGC	2 cut(s)	72, 341
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	2 cut(s)	556, 645
NdeII	GATC	3 cut(s)	109, 187, 544
NlaIII	CATG	3 cut(s)	221, 496, 682
NlaIV	GGNNCC	2 cut(s)	384, 546
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	2 cut(s)	221, 496
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	43, 65
PfeI	GAWTC	2 cut(s)	125, 395
PkrI	GCNGC	3 cut(s)	65, 172, 364
PleI	GAGTC	1 cut(s)	526
PmaCI	CACGTG	1 cut(s)	670
PmlI	CACGTG	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	526
Ppu21I	YACGTR	1 cut(s)	670
PspCI	CACGTG	1 cut(s)	670
PspFI	CCCAGC	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	384, 546
PstNI	CAGNNNCTG	2 cut(s)	128, 209
PsuI	RGATCY	2 cut(s)	187, 544
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	4 cut(s)	132, 527, 581, 664
RsaNI	GTAC	4 cut(s)	131, 526, 580, 663
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	314, 593
SatI	GCNGC	3 cut(s)	64, 171, 363
Sau3AI	GATC	3 cut(s)	109, 187, 544
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	5 cut(s)	103, 367, 388, 585, 672
SfaNI	GCATC	2 cut(s)	50, 451
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	161, 311, 444, 594
SsiI	CCGC	1 cut(s)	486
SspMI	CTAG	4 cut(s)	191, 336, 458, 497
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	201, 689
TaiI	ACGT	1 cut(s)	672
TasI	AATT	4 cut(s)	161, 311, 444, 594
TatI	WGTACW	2 cut(s)	130, 525
TfiI	GAWTC	2 cut(s)	125, 395
Tru1I	TTAA	2 cut(s)	314, 593
Tru9I	TTAA	2 cut(s)	314, 593
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	3 cut(s)	63, 170, 362
TspDTI	ATGAA	7 cut(s)	24, 228, 335, 341, 494, 632, 667
TspRI	CASTG	1 cut(s)	692
VneI	GTGCAC	1 cut(s)	20
XbaI	TCTAGA	2 cut(s)	190, 457
XceI	RCATGY	2 cut(s)	221, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	4 cut(s)	191, 336, 458, 497
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.