Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Reverse (-)

17263326 .. 17265938

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G166600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTGACGAAGGAAGAGTACACCCAGATTGCAGAAATGCATCCAATCCCTACCATGAATGCAGCGAATATTGCTTTACAGTTATTGCCGAAGCTAAGGCTCGAATGGATCAAAACCAATCAGAAGATGTGCAAGCCAGTGGTGGTAGTGGAAAATCCAACTCAGAGGCCGCTGAGCAAGAGGAATATGTACATAATGAAAAACCAGATTCTGAAGAACATGCTGATGATGGTGATGACCATCCCGAGGAGAATATGGAAGGAGACTTCACAAAGTTCACAGGGAGGAAGAAAAAATTGTGGGAATTGAGGATGAAGATGAATAAGGCAAGAAAAGACAATCAAACGGATATTACAGCTGAAAAGAAAAGACTGGAACCTCCACAAGAGTCCAGGGGCATTTCTAAACAAAAATGGCTTGAAGAGAGGAAGAAAAGAATTGGCAAACTTCTAGATGCAAATAATTTGGATATGAAAAGCGCGTACATGCTAGATACACAAGAGATGGCAGAGGCAAAATACAAGAAATGGGAAAAGGATCCAGCCCCAGCTGGCTGGGATGTTTTCAATCAGAAAACTCTGTATGATGCATACAAAAAGCGAACAAAGAACATTGAGATTGACTTGGAAGAATACAATAGGATGAAAGAGGCTGATCCAGAGTTCTATCGTGAAGCTTCCAGCCTCCAATATGGGAAGGCTCCAAAGATATCAGAGGACAAGATTGATAAGATGGTGAAGGAACTCAAGGATCGGGAAGAGAAGAAGAAGTCATTTAGCAGGAGGAGGAGGTTCCACGATGAGAAAGATATTGACTCGATCAATGACCGAAATGAGCATTTCAATAAGAAGATTGAGCGAGCCTTTGGTAGATACACACTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTGCCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

309

Amino Acids

36.22

Weight (kDa)

5.96

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	482
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	5 cut(s)	117, 533, 546, 650, 759
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	21, 192, 485
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	422, 568, 844
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	4 cut(s)	95, 359, 551, 677
AluI	AGCT	4 cut(s)	95, 359, 551, 677
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	5 cut(s)	117, 533, 546, 650, 759
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	245, 748
AvaI	CYCGRG	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	4 cut(s)	224, 249, 499, 727
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	3 cut(s)	452, 491, 925
BisI	GCNGC	2 cut(s)	64, 171
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	65, 172
Bme1390I	CCNGG	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	245
BmiI	GGNNCC	4 cut(s)	378, 540, 702, 794
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	3 cut(s)	50, 445, 577
BpmI	CTGGAG	1 cut(s)	902
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	731, 920
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	246, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	138, 378, 885
Bse3DI	GCAATG	1 cut(s)	914
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	246, 393
BseGI	GGATG	5 cut(s)	41, 241, 318, 565, 648
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	914
BseMII	CTCAG	2 cut(s)	165, 177
BseNI	ACTGG	3 cut(s)	138, 378, 885
BseRI	GAGGAG	3 cut(s)	263, 799, 802
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	2 cut(s)	547, 555
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	166, 176
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	4 cut(s)	378, 540, 702, 794
BspPI	GGATC	5 cut(s)	117, 533, 546, 650, 759
BsrDI	GCAATG	1 cut(s)	914
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	138, 378, 885
BssECI	CCNNGG	2 cut(s)	246, 393
BssMI	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	3 cut(s)	10, 417, 753
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	135, 553, 861
BstDEI	CTNAG	3 cut(s)	96, 163, 174
BstF5I	GGATG	5 cut(s)	41, 241, 318, 565, 648
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	6 cut(s)	112, 541, 658, 754, 822, 888
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	2 cut(s)	224, 490
BstSCI	CCNGG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	5 cut(s)	41, 241, 318, 565, 648
BtsIMutI	CAGTG	2 cut(s)	145, 878
Cac8I	GCNNGC	3 cut(s)	135, 553, 861
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	20, 191, 484
CviAII	CATG	3 cut(s)	56, 221, 487
CviQI	GTAC	3 cut(s)	20, 191, 484
DdeI	CTNAG	3 cut(s)	96, 163, 174
DpnI	GATC	6 cut(s)	111, 540, 657, 753, 821, 887
DpnII	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
Eam1104I	CTCTTC	3 cut(s)	10, 417, 753
EarI	CTCTTC	3 cut(s)	10, 417, 753
Eco32I	GATATC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	711
EcoT22I	ATGCAT	2 cut(s)	43, 592
FaeI	CATG	3 cut(s)	59, 224, 490
FatI	CATG	3 cut(s)	55, 220, 486
Fnu4HI	GCNGC	2 cut(s)	64, 171
FokI	GGATG	5 cut(s)	28, 228, 325, 572, 655
Fsp4HI	GCNGC	2 cut(s)	64, 171
FspBI	CTAG	3 cut(s)	452, 491, 925
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	64, 171
GsaI	CCCAGC	2 cut(s)	551, 559
GsuI	CTGGAG	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	59, 224, 490
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	3 cut(s)	209, 389, 815
HphI	GGTGA	2 cut(s)	245, 748
Hpy166II	GTNNAC	2 cut(s)	22, 279
Hpy188I	TCNGA	6 cut(s)	7, 124, 166, 214, 573, 715
Hpy188III	TCNNGA	6 cut(s)	245, 452, 659, 671, 755, 899
Hpy8I	GTNNAC	2 cut(s)	22, 279
HpyAV	CCTTC	4 cut(s)	5, 254, 691, 733
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	33, 41, 63, 133, 458, 590, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	3 cut(s)	96, 163, 174
Hsp92II	CATG	3 cut(s)	59, 224, 490
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	3 cut(s)	50, 445, 577
MaeI	CTAG	3 cut(s)	452, 491, 925
MalI	GATC	6 cut(s)	111, 540, 657, 753, 821, 887
MboI	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	4 cut(s)	296, 305, 438, 463
MlyI	GAGTC	2 cut(s)	398, 809
MmeI	TCCRAC	1 cut(s)	183
Mph1103I	ATGCAT	2 cut(s)	43, 592
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	3 cut(s)	173, 359, 551
MspR9I	CCNGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
NlaIII	CATG	3 cut(s)	59, 224, 490
NlaIV	GGNNCC	4 cut(s)	378, 540, 702, 794
NsiI	ATGCAT	2 cut(s)	43, 592
NspI	RCATGY	2 cut(s)	224, 490
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	65, 172
PleI	GAGTC	2 cut(s)	397, 809
PpsI	GAGTC	2 cut(s)	397, 809
Psp6I	CCWGG	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	547, 555
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	4 cut(s)	378, 540, 702, 794
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	2 cut(s)	359, 551
RsaI	GTAC	3 cut(s)	21, 192, 485
RsaNI	GTAC	3 cut(s)	20, 191, 484
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	2 cut(s)	64, 171
Sau3AI	GATC	6 cut(s)	109, 538, 655, 751, 819, 885
SchI	GAGTC	2 cut(s)	398, 809
ScrFI	CCNGG	1 cut(s)	394
SetI	ASST	6 cut(s)	97, 361, 382, 553, 679, 794
SfaNI	GCATC	3 cut(s)	50, 445, 577
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	746, 899
SmoI	CTYRAG	2 cut(s)	746, 899
Sse9I	AATT	4 cut(s)	296, 305, 438, 463
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	3 cut(s)	452, 491, 925
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	103, 818
TaqII	GACCGA	1 cut(s)	843
TasI	AATT	4 cut(s)	296, 305, 438, 463
TatI	WGTACW	2 cut(s)	19, 190
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	2 cut(s)	145, 885
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	6 cut(s)	72, 213, 329, 335, 488, 659
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	145, 885
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	2 cut(s)	224, 490
XspI	CTAG	3 cut(s)	452, 491, 925
Zsp2I	ATGCAT	2 cut(s)	43, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.