Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Forward (+)

52567731 .. 52568777

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGATGAAGGAAGAGTGCACCCGGATTGCAGGAATGCATCCAATCCCTACCATGAATGCAGTGAGTTTTGCTTCAAAGTTATTGCTGAAACCAAAGCTCGGATGGATCAAAATCAATCAGAATCTGTACAAGTTAGTAGTGGTAGTGGCAAATCAAAATTAGAGGCTGCTCAGCAAGAGGAAGATCTAGATAGACCATCAGAGACTGATGAACATGCTGGTGATGGTGATGAGCCTCATGTTGACGAGGAGGAGAATATGGAAGGAGACTTCACGAAGTTCACAGGGAGGAAGAAAAAGTTGTGGGAATTAAGGATGATCGAAGATGAATATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

113

Amino Acids

12.87

Weight (kDa)

4.52

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	2 cut(s)	128, 209
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	236, 242
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	100, 208, 221
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	2 cut(s)	191, 340
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	3 cut(s)	41, 111, 324
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	266, 269
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	2 cut(s)	43, 65
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	109, 187, 321
Bsp1720I	GCTNAGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	130
BssMI	GATC	3 cut(s)	109, 187, 321
Bst6I	CTCTTC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	41, 111, 324
BstKTI	GATC	3 cut(s)	112, 190, 324
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	3 cut(s)	109, 187, 321
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	41, 111, 324
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
CaiI	CAGNNNCTG	2 cut(s)	128, 209
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	3 cut(s)	56, 218, 242
CviJI	RGCY	4 cut(s)	101, 170, 238, 339
CviKI_1	RGCY	4 cut(s)	101, 170, 238, 339
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	111, 189, 323
DpnII	GATC	3 cut(s)	109, 187, 321
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	3 cut(s)	59, 221, 245
FaiI	YATR	5 cut(s)	57, 219, 243, 263, 336
FatI	CATG	3 cut(s)	55, 217, 241
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	28, 118, 331
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	191, 340
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	59, 221, 245
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	236, 242
Hpy166II	GTNNAC	3 cut(s)	22, 247, 285
Hpy188I	TCNGA	4 cut(s)	7, 105, 124, 205
Hpy188III	TCNNGA	2 cut(s)	191, 277
Hpy8I	GTNNAC	3 cut(s)	22, 247, 285
HpyAV	CCTTC	2 cut(s)	5, 260
HpyCH4V	TGCA	4 cut(s)	22, 33, 41, 63
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	59, 221, 245
Kzo9I	GATC	3 cut(s)	109, 187, 321
LpnPI	CCDG	4 cut(s)	19, 39, 207, 273
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	191, 340
MalI	GATC	3 cut(s)	111, 189, 323
MboI	GATC	3 cut(s)	109, 187, 321
MboII	GAAGA	4 cut(s)	27, 197, 307, 338
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	161, 311
MnlI	CCTC	6 cut(s)	160, 175, 244, 247, 249, 285
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	43, 65
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	109, 187, 321
NlaIII	CATG	3 cut(s)	59, 221, 245
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	221
PctI	GAATGC	2 cut(s)	43, 65
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	172
PstNI	CAGNNNCTG	2 cut(s)	128, 209
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	109, 187, 321
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	161, 311
SspMI	CTAG	2 cut(s)	191, 340
StyD4I	CCNGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	161, 311
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	24, 72, 228
TspRI	CASTG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	2 cut(s)	191, 340
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.