Rh1BG047000

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002812
Physical Location & Seq
Reverse (-)
6509097 .. 6509384
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG047000.1

Sequence Viewer

Length: 288 bp
ATGGAAGAATACAATAAGATGAAACAGGAAGGAGCTTTTAGCTGCCTCGAAAATGGAAAGACTCCGAAGGTCTCGGAGGAGAAAGTTGACAAGATGTTGCAGGAGCTCAAGGAACTCGAAGAGAAGAAAAAGAAATTTAGCAGGAGGAGGAGGTTCCATGAGGACAAGGATATTGACTCGATCAATGACCGCAATGAGCATTTCAACAAGAAGATTGAGAGAGCCTTTGGTAAGTACACATTGGAAATCAAAAACAATCTCGAGCGAGGTACTGCATTGCCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

95

Amino Acids

11.41

Weight (kDa)

8.63

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYF2 PF08231 1 - 88 1.2e-25 SYF2 splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 236, 271
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 3 cut(s) 35, 42, 106
AluI AGCT 3 cut(s) 35, 42, 106
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 260
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 76
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 76
Bse3DI GCAATG 2 cut(s) 199, 275
BseMI GCAATG 2 cut(s) 199, 275
BseRI GAGGAG 3 cut(s) 92, 160, 163
BseXI GCAGC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 199, 275
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 114
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 235, 270
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 35, 42, 106, 224
CviKI_1 RGCY 4 cut(s) 35, 42, 106, 224
CviQI GTAC 2 cut(s) 235, 270
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 2 cut(s) 61, 176
Hpy166II GTNNAC 2 cut(s) 88, 237
Hpy188I TCNGA 2 cut(s) 66, 76
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 88, 237
HpyAV CCTTC 2 cut(s) 23, 61
HpyCH4V TGCA 2 cut(s) 100, 275
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 32, 103
LpnPI CCDG 3 cut(s) 11, 86, 127
Lsp1109I GCAGC 1 cut(s) 29
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 4 cut(s) 17, 131, 136, 223
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 134
MlyI GAGTC 2 cut(s) 55, 170
MnlI CCTC 7 cut(s) 56, 70, 138, 141, 144, 154, 260
MseI TTAA 1 cut(s) 286
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 2 cut(s) 55, 170
PpsI GAGTC 2 cut(s) 55, 170
Psp124BI GAGCTC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 155
RsaI GTAC 2 cut(s) 236, 271
RsaNI GTAC 2 cut(s) 235, 270
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 286
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 180
SchI GAGTC 2 cut(s) 55, 170
SduI GDGCHC 1 cut(s) 108
SetI ASST 6 cut(s) 37, 44, 72, 108, 155, 271
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 107, 260
SmoI CTYRAG 2 cut(s) 107, 260
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 190
SstI GAGCTC 1 cut(s) 108
TaqI TCGA 4 cut(s) 48, 117, 179, 261
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.