Rorug01G0037000

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002812
Physical Location & Seq
Reverse (-)
6133181 .. 6136336
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0037000.1

Sequence Viewer

Length: 750 bp
ATGAGGAAGCGGGGACTAAAACTCAAAATTTTCACACTTAGAAAAAAAATTGTGCCCGACCCCAAAACTGAAACACAAAACCCTAAGCTCCGTTCTCAACCCAAAATTGAGCTCCTCCTAAACTCGAGCTCCTCTTCCTCCTCCTCACCATCACAATCATCCCTCCTCCATTCTCAGGCGGAATCTGAACCCCACCGAAGTCGGGGTTGGAGCCCAAAACCCGAACACAGCAACCCAGCTGCACTCAACTGCGCCGTGTCTGACTCTCTCCGTGACTCCTTGTCTCCGTCTCCGCCGTTTCTGACTCTCTCCGTCCCCGACTCTCAATCTCCGCCTCTCCGGTCTCCCGTCTCCGAGCTCCAGCTTTACATTGAAGGCCTTGGTTATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAATATGGTGAAAGCAATTTTTTCTGGACAACCACTTCCTACCAAACTAATGCTTAAGAACAATTGTATTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTGAAGACGAAGGAGCAGCTGGGATATGTTGTTCAGTGTGACTGGGAGGTGATATTTGGTGTTTTTGGCTTTTATTTCATAGTTCAGTCGTCGGAGTACAACCCAATCTACTTGCAGCGGAGAGTTGACAACATTATCAATGGTCTGGAAGACATTTTGGTAAGCATTCGAGGTTCCTTTCATATACTGCTAGTGAGTAGTGCCATAAGAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

249

Amino Acids

27.67

Weight (kDa)

9.03

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PqqF-like_C_4 PF22456 179 - 230 1.6e-08 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 10, 179, 293, 332, 649
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 2 cut(s) 175, 202
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 374, 424
AhdI GACNNNNNGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 8 cut(s) 88, 112, 129, 239, 358, 364, 550, 743
AluI AGCT 8 cut(s) 88, 112, 129, 239, 358, 364, 550, 743
Alw21I GWGCWC 3 cut(s) 114, 131, 360
Alw26I GTCTC 5 cut(s) 288, 294, 348, 355, 500
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 3 cut(s) 239, 547, 646
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 138, 442, 592
AvaI CYCGRG 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 57
BanII GRGCYC 4 cut(s) 114, 131, 215, 360
BbsI GAAGAC 2 cut(s) 542, 687
Bbv12I GWGCWC 3 cut(s) 114, 131, 360
BbvI GCAGC 3 cut(s) 226, 559, 658
BccI CCATC 1 cut(s) 157
BceAI ACGGC 2 cut(s) 239, 280
BcoDI GTCTC 5 cut(s) 288, 294, 348, 355, 500
BfaI CTAG 2 cut(s) 722, 744
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 3 cut(s) 240, 548, 647
BlsI GCNGC 3 cut(s) 241, 549, 648
BmeRI GACNNNNNGTC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 212, 706
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 1 cut(s) 496
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 542, 687
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 202
Bse1I ACTGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 175, 202
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 578
BseRI GAGGAG 5 cut(s) 104, 121, 130, 133, 155
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 3 cut(s) 226, 559, 658
BseYI CCCAGC 2 cut(s) 235, 550
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 378
BsiHKAI GWGCWC 3 cut(s) 114, 131, 360
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 2 cut(s) 27, 299
BslI CCNNNNNNNGG 2 cut(s) 175, 202
BsmAI GTCTC 5 cut(s) 288, 294, 348, 355, 500
BsmBI CGTCTC 2 cut(s) 294, 355
BsmFI GGGAC 2 cut(s) 27, 299
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 1 cut(s) 378
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 5 cut(s) 57, 114, 131, 215, 360
BspACI CCGC 5 cut(s) 10, 179, 293, 332, 649
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 212, 706
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 38, 84, 174
BstF5I GGATG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 254
BstMAI GTCTC 5 cut(s) 288, 294, 348, 355, 500
BstMWI GCNNNNNNNGC 2 cut(s) 506, 740
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 226, 559, 658
BstV2I GAAGAC 2 cut(s) 542, 687
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 535, 572
CfoI GCGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 628
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 3 cut(s) 38, 84, 174
DriI GACNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 3 cut(s) 194, 282, 321
Ecl136II GAGCTC 3 cut(s) 112, 129, 358
Eco130I CCWWGG 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 4 cut(s) 114, 131, 215, 360
Eco31I GGTCTC 1 cut(s) 348
Eco53kI GAGCTC 3 cut(s) 112, 129, 358
Eco88I CYCGRG 1 cut(s) 124
EcoICRI GAGCTC 3 cut(s) 112, 129, 358
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 4 cut(s) 114, 131, 215, 360
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 2 cut(s) 294, 355
FaiI YATR 7 cut(s) 387, 428, 558, 611, 714, 716, 737
FaqI GGGAC 2 cut(s) 27, 299
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 240, 548, 647
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 4 cut(s) 114, 131, 215, 360
Fsp4HI GCNGC 3 cut(s) 240, 548, 647
FspBI CTAG 2 cut(s) 722, 744
GlaI GCGC 1 cut(s) 253
GluI GCNGC 3 cut(s) 240, 548, 647
GsaI CCCAGC 2 cut(s) 239, 554
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 340
HhaI GCGC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 5 cut(s) 182, 263, 275, 304, 320
HpaII CCGG 1 cut(s) 340
HphI GGTGA 3 cut(s) 138, 442, 592
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 5 cut(s) 187, 262, 303, 355, 625
Hpy188III TCNNGA 3 cut(s) 447, 503, 677
Hpy8I GTNNAC 1 cut(s) 658
Hpy99I CGWCG 1 cut(s) 625
HpyAV CCTTC 2 cut(s) 368, 535
HpyCH4V TGCA 2 cut(s) 242, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 740
HpyF3I CTNAG 3 cut(s) 38, 84, 174
HspAI GCGC 1 cut(s) 252
LmnI GCTCC 7 cut(s) 93, 117, 134, 210, 363, 505, 544
LpnPI CCDG 9 cut(s) 161, 249, 353, 374, 432, 516, 536, 559, 662
Lsp1109I GCAGC 3 cut(s) 226, 559, 658
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 722, 744
MaeIII GTNAC 2 cut(s) 272, 569
MboII GAAGA 5 cut(s) 126, 413, 416, 547, 692
MfeI CAATTG 1 cut(s) 484
MhlI GDGCHC 5 cut(s) 57, 114, 131, 215, 360
MluCI AATT 6 cut(s) 27, 48, 105, 411, 438, 484
MlyI GAGTC 4 cut(s) 257, 269, 298, 314
MmeI TCCRAC 2 cut(s) 188, 603
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 3 cut(s) 239, 550, 649
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 484
Mva1269I GAATGC 1 cut(s) 696
MwoI GCNNNNNNNGC 2 cut(s) 506, 740
NlaIV GGNNCC 2 cut(s) 212, 706
NmuCI GTSAC 2 cut(s) 272, 569
PaeR7I CTCGAG 1 cut(s) 124
PceI AGGCCT 1 cut(s) 378
PctI GAATGC 1 cut(s) 696
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 3 cut(s) 241, 549, 648
PleI GAGTC 4 cut(s) 257, 269, 298, 314
PpsI GAGTC 4 cut(s) 257, 269, 298, 314
Psp124BI GAGCTC 3 cut(s) 114, 131, 360
PspFI CCCAGC 2 cut(s) 235, 550
PspN4I GGNNCC 2 cut(s) 212, 706
PspXI VCTCGAGB 1 cut(s) 124
PvuII CAGCTG 2 cut(s) 239, 550
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
SacI GAGCTC 3 cut(s) 114, 131, 360
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 3 cut(s) 240, 548, 647
SchI GAGTC 4 cut(s) 257, 269, 298, 314
SduI GDGCHC 5 cut(s) 57, 114, 131, 215, 360
SfaNI GCATC 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 124, 476
SmoI CTYRAG 2 cut(s) 124, 476
Sse9I AATT 6 cut(s) 27, 48, 105, 411, 438, 484
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 5 cut(s) 10, 179, 293, 332, 649
SspMI CTAG 2 cut(s) 722, 744
SstI GAGCTC 3 cut(s) 114, 131, 360
StuI AGGCCT 1 cut(s) 378
StyI CCWWGG 1 cut(s) 379
TaqI TCGA 2 cut(s) 125, 700
TasI AATT 6 cut(s) 27, 48, 105, 411, 438, 484
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 535, 572
TseFI GTSAC 2 cut(s) 272, 569
TseI GCWGC 3 cut(s) 239, 547, 646
Tsp45I GTSAC 2 cut(s) 272, 569
TspDTI ATGAA 2 cut(s) 598, 701
TspGWI ACGGA 4 cut(s) 80, 260, 276, 301
TspRI CASTG 2 cut(s) 535, 572
Vha464I CTTAAG 1 cut(s) 476
XapI RAATTY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 124
XspI CTAG 2 cut(s) 722, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.