Pre-mRNA-splicing factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16860 AT2G16860 |
| fragaria_vesca | FvH4_2g15441 FvH4_2g15441 |
| malus_domestica | MD05G1122700.v1.1 |
| prunus_persica | Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 |
| pyrus_communis | pycom05g11700 |
| rosa_chinensis | RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751 |
| rosa_laevigata | RLG00000013230 RLG00000019262 RLG00000030344 |
| rosa_multiflora | Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00326720 Rroxscaffold_7G00190370 |
| rosa_rugosa | Rorug01G0037000 Rorug01G0037100 |
| rosa_samantha | Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700 |
| rosa_wichuraiana | Rw1G004730 Rw6G003670 Rw6G019720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 5 |
| AgsI | TTSAA | 1 cut(s) | 136 |
| AluBI | AGCT | 2 cut(s) | 36, 158 |
| AluI | AGCT | 2 cut(s) | 36, 158 |
| Alw21I | GWGCWC | 1 cut(s) | 89 |
| Alw44I | GTGCAC | 1 cut(s) | 85 |
| ApaLI | GTGCAC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 1 cut(s) | 120 |
| AsuC2I | CCSGG | 1 cut(s) | 91 |
| BaeGI | GKGCMC | 1 cut(s) | 89 |
| Bbv12I | GWGCWC | 1 cut(s) | 89 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BcnI | CCSGG | 1 cut(s) | 91 |
| BisI | GCNGC | 1 cut(s) | 121 |
| BlsI | GCNGC | 1 cut(s) | 122 |
| Bme1390I | CCNGG | 1 cut(s) | 91 |
| BmrFI | CCNGG | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BpuMI | CCSGG | 1 cut(s) | 91 |
| BsaWI | WCCGGW | 1 cut(s) | 29 |
| BseGI | GGATG | 1 cut(s) | 98 |
| BseSI | GKGCMC | 1 cut(s) | 89 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 1 cut(s) | 89 |
| BsiSI | CCGG | 2 cut(s) | 30, 91 |
| BsmI | GAATGC | 1 cut(s) | 122 |
| Bsp1286I | GDGCHC | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 129 |
| BstDEI | CTNAG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 98 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 129 |
| BstSCI | CCNGG | 1 cut(s) | 89 |
| BstSLI | GKGCMC | 1 cut(s) | 89 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BtsCI | GGATG | 1 cut(s) | 98 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 2 cut(s) | 66, 113 |
| CviJI | RGCY | 3 cut(s) | 36, 59, 158 |
| CviKI_1 | RGCY | 3 cut(s) | 36, 59, 158 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 1 cut(s) | 159 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| FaeI | CATG | 2 cut(s) | 69, 116 |
| FaiI | YATR | 3 cut(s) | 50, 67, 114 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 116, 148 |
| FatI | CATG | 2 cut(s) | 65, 112 |
| Fnu4HI | GCNGC | 1 cut(s) | 121 |
| FokI | GGATG | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 1 cut(s) | 121 |
| GluI | GCNGC | 1 cut(s) | 121 |
| HapII | CCGG | 2 cut(s) | 30, 91 |
| Hin1II | CATG | 2 cut(s) | 69, 116 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 1 cut(s) | 62 |
| HpaII | CCGG | 2 cut(s) | 30, 91 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 1 cut(s) | 10 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 4 cut(s) | 42, 87, 98, 120 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 129 |
| HpyF3I | CTNAG | 1 cut(s) | 159 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 2 cut(s) | 69, 116 |
| LpnPI | CCDG | 2 cut(s) | 43, 104 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MhlI | GDGCHC | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 30, 91 |
| MspR9I | CCNGG | 1 cut(s) | 91 |
| Mva1269I | GAATGC | 1 cut(s) | 122 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 129 |
| NciI | CCSGG | 1 cut(s) | 91 |
| NlaIII | CATG | 2 cut(s) | 69, 116 |
| PctI | GAATGC | 1 cut(s) | 122 |
| PfeI | GAWTC | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 122 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SatI | GCNGC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 1 cut(s) | 91 |
| SduI | GDGCHC | 1 cut(s) | 89 |
| SetI | ASST | 3 cut(s) | 9, 38, 160 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SgeI | CNNG | 7 cut(s) | 22, 42, 78, 102, 103, 125, 136 |
| StyD4I | CCNGG | 1 cut(s) | 89 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TfiI | GAWTC | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 120 |
| TspDTI | ATGAA | 2 cut(s) | 89, 129 |
| VneI | GTGCAC | 1 cut(s) | 85 |