RLG00000030344

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002812
Physical Location & Seq
Forward (+)
59847306 .. 59848175
870 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030344

Sequence Viewer

Length: 870 bp
ATGTCTTCTAGTGAAAGAACAGTGCACTCGGAGTGCAAGAATTCGTCCAATCTCTACCATGAATGCCGTGAATGTTGCTTCAAAGCTATTTTAGAAGCCAGAGATGGGATGGATCTAAATGATGTAAATCAACTGCTGGATTCTGTACAAGATAATAGTGGCAACTCAAACTTAGAGGCTGCTCCTCAGCGACAGAAAGAAGATGCTGATAATGGTGTTGACCACACAAAGTTGACAGGGAGGAAGAAAAAATTGAAGGAATTGCAGAAGAAGGTGAAAGAGGCTATAGATAAGAATCAAACACAGGTTAAAGCCGAACAGAAAAGAATGGAGCCTCCAGAAGAACCGTCGAGGGGGATTACGAAACAAAAATGGCTTGAAGAGAGGGAGAGAAAGATGGGGAAACTCTTGGATGCAAATGGTTTGGATTTGAAAAGAGCATACATGCTAGATACACAAGAGATGGCCGAGGCAAAATACAAGAGATGGAAAAAGAAACCTGCACCATGTGGCTGGGATGTTTTTAATTCGAAAACATTGTACAATGCACACAAAAAACGAACAAACAAGATCGAAGTTGACATGGAAGAATACAATAAGATGAAACAGGAAGGAGCTTTTAGCTGCCTCGAAAATGGAAAGACTCCGAAGCTCTCGGAGGAGAAAGTTGACAAGATGTTGCAGGAGCTCAAGGAACTCGAAGAGAAGAAAAAGAAATTTAGCAGGAGGAGGAGGTTCCATGAGGACATGGATATTGATTCGATCAATGACCGCAATGAGCATTTCAACAAGAAGATTGAGAGAGCCTTTGGTAAGCACACATTGGAAATCAAAAACAATCTCGAGCGAGGTACTGCATTGCCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

290

Amino Acids

33.83

Weight (kDa)

8.97

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYF2 PF08231 140 - 282 3.1e-33 SYF2 splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
AciI CCGC 1 cut(s) 772
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 40, 716
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 3 cut(s) 147, 542, 853
AfiI CCNNNNNNNGG 2 cut(s) 105, 353
AgsI TTSAA 5 cut(s) 82, 256, 380, 433, 787
AluBI AGCT 5 cut(s) 86, 617, 624, 652, 688
AluI AGCT 5 cut(s) 86, 617, 624, 652, 688
Alw21I GWGCWC 2 cut(s) 27, 690
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 1 cut(s) 465
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 179, 624
ApoI RAATTY 2 cut(s) 40, 716
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 27, 690
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 166, 611
BccI CCATC 5 cut(s) 98, 103, 391, 457, 480
BceAI ACGGC 1 cut(s) 51
BfaI CTAG 2 cut(s) 9, 449
BfmI CTRYAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 2 cut(s) 180, 625
BlsI GCNGC 2 cut(s) 181, 626
BmeT110I CYCGRG 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 333, 737
BmsI GCATC 2 cut(s) 193, 403
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 674
BsaBI GATNNNNATC 2 cut(s) 126, 294
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 353
Bse3DI GCAATG 2 cut(s) 781, 857
Bse8I GATNNNNATC 2 cut(s) 126, 294
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 114, 418, 523
BseJI GATNNNNATC 2 cut(s) 126, 294
BseLI CCNNNNNNNGG 2 cut(s) 105, 353
BseMI GCAATG 2 cut(s) 781, 857
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 4 cut(s) 174, 674, 742, 745
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 166, 611
BseYI CCCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 27, 690
BsiHKCI CYCGRG 1 cut(s) 842
BslI CCNNNNNNNGG 2 cut(s) 105, 353
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 27, 690
Bsp1407I TGTACA 2 cut(s) 145, 540
Bsp143I GATC 3 cut(s) 112, 570, 762
BspACI CCGC 1 cut(s) 772
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 333, 737
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 530
BsrDI GCAATG 2 cut(s) 781, 857
BsrGI TGTACA 2 cut(s) 145, 540
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 3 cut(s) 112, 570, 762
Bst4CI ACNGT 2 cut(s) 22, 348
Bst6I CTCTTC 2 cut(s) 375, 696
BstAUI TGTACA 2 cut(s) 145, 540
BstBI TTCGAA 1 cut(s) 530
BstDEI CTNAG 2 cut(s) 172, 186
BstF5I GGATG 3 cut(s) 114, 418, 523
BstKTI GATC 3 cut(s) 115, 573, 765
BstMBI GATC 3 cut(s) 112, 570, 762
BstNSI RCATGY 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 166, 611
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 467
BtsCI GGATG 3 cut(s) 114, 418, 523
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 146, 541, 852
CviAII CATG 6 cut(s) 59, 445, 507, 583, 740, 748
CviQI GTAC 3 cut(s) 146, 541, 852
DdeI CTNAG 2 cut(s) 172, 186
DpnI GATC 3 cut(s) 114, 572, 764
DpnII GATC 3 cut(s) 112, 570, 762
DraIII CACNNNGTG 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 375, 696
EarI CTCTTC 2 cut(s) 375, 696
Ecl136II GAGCTC 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 690
Eco53kI GAGCTC 1 cut(s) 688
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 690
FaeI CATG 6 cut(s) 62, 448, 510, 586, 743, 751
FaiI YATR 8 cut(s) 60, 287, 442, 446, 508, 584, 741, 749
FatI CATG 6 cut(s) 58, 444, 506, 582, 739, 747
Fnu4HI GCNGC 2 cut(s) 180, 625
FokI GGATG 3 cut(s) 121, 425, 530
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 2 cut(s) 180, 625
FspBI CTAG 2 cut(s) 9, 449
GluI GCNGC 2 cut(s) 180, 625
GsaI CCCAGC 1 cut(s) 517
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 467
Hin1II CATG 6 cut(s) 62, 448, 510, 586, 743, 751
HincII GTYRAC 4 cut(s) 220, 234, 580, 670
HindII GTYRAC 4 cut(s) 220, 234, 580, 670
HinfI GANTC 4 cut(s) 140, 295, 643, 758
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 5 cut(s) 25, 220, 234, 580, 670
Hpy188I TCNGA 3 cut(s) 31, 648, 658
Hpy188III TCNNGA 2 cut(s) 338, 842
Hpy8I GTNNAC 5 cut(s) 25, 220, 234, 580, 670
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 3 cut(s) 250, 265, 605
HpyCH4III ACNGT 2 cut(s) 22, 348
HpyCH4V TGCA 8 cut(s) 25, 36, 265, 416, 503, 548, 682, 857
HpyF3I CTNAG 2 cut(s) 172, 186
Hsp92II CATG 6 cut(s) 62, 448, 510, 586, 743, 751
Kzo9I GATC 3 cut(s) 112, 570, 762
LmnI GCTCC 4 cut(s) 187, 331, 614, 685
Lsp1109I GCAGC 2 cut(s) 166, 611
LweI GCATC 2 cut(s) 193, 403
MaeI CTAG 2 cut(s) 9, 449
MalI GATC 3 cut(s) 114, 572, 764
MboI GATC 3 cut(s) 112, 570, 762
MboII GAAGA 9 cut(s) 212, 256, 280, 353, 392, 599, 713, 718, 805
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 27, 690
MluCI AATT 5 cut(s) 40, 251, 260, 526, 716
MlyI GAGTC 1 cut(s) 637
MseI TTAA 3 cut(s) 309, 525, 868
Mva1269I GAATGC 1 cut(s) 68
NdeII GATC 3 cut(s) 112, 570, 762
NlaIII CATG 6 cut(s) 62, 448, 510, 586, 743, 751
NlaIV GGNNCC 2 cut(s) 333, 737
NmeAIII GCCGAG 1 cut(s) 493
NspI RCATGY 1 cut(s) 448
NspV TTCGAA 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 842
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 140, 295, 758
PkrI GCNGC 2 cut(s) 181, 626
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 333, 737
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 3 cut(s) 147, 542, 853
RsaNI GTAC 3 cut(s) 146, 541, 852
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 3 cut(s) 309, 525, 868
SatI GCNGC 2 cut(s) 180, 625
Sau3AI GATC 3 cut(s) 112, 570, 762
SchI GAGTC 1 cut(s) 637
SduI GDGCHC 2 cut(s) 27, 690
SfaNI GCATC 2 cut(s) 193, 403
SfcI CTRYAG 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 842
SfuI TTCGAA 1 cut(s) 530
SlaI CTCGAG 1 cut(s) 842
SmlI CTYRAG 2 cut(s) 689, 842
SmoI CTYRAG 2 cut(s) 689, 842
Sse9I AATT 5 cut(s) 40, 251, 260, 526, 716
SsiI CCGC 1 cut(s) 772
SspMI CTAG 2 cut(s) 9, 449
SstI GAGCTC 1 cut(s) 690
TaaI ACNGT 2 cut(s) 22, 348
TaqI TCGA 7 cut(s) 350, 530, 573, 630, 699, 761, 843
TasI AATT 5 cut(s) 40, 251, 260, 526, 716
TatI WGTACW 2 cut(s) 145, 540
TfiI GAWTC 3 cut(s) 140, 295, 758
Tru1I TTAA 3 cut(s) 309, 525, 868
Tru9I TTAA 3 cut(s) 309, 525, 868
TscAI CASTG 1 cut(s) 27
TseI GCWGC 2 cut(s) 179, 624
TspDTI ATGAA 2 cut(s) 75, 617
TspRI CASTG 1 cut(s) 27
VneI GTGCAC 1 cut(s) 23
XapI RAATTY 2 cut(s) 40, 716
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 842
XspI CTAG 2 cut(s) 9, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.