Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003837.1

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Reverse (-)

81489 .. 83665

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003837.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgtctgatgaaggaagagtgcacccggattgcaggaatgcatccaatccctaccacgaatgcagcgagttttgcttcaaagttattgctgaaaccaaagctcggatggatcaaaatcagtcagaatctgtacaagttagtggtggtagtggcaaatcaaaattagaggctgctcagcaagaggaagatctagatagaccatcagagactgatgaacatgctgatgatggtgatgagcctcctgttgaggaggaggagaatatggaaggagacttcacaaagttcacagggaggaagaaaaagttgtgggaattaaggatgaagatgaataaggctaggaaagcaaatcaaacagatattgcagctgaaaagaaaagaatggaacctccacaagaatcaaggggcatttctaaacaaaaatggcttgaagagaggaaaaaaagaattggtaaacttctagatgcaaatggtttggatatgaaaaccgcttacatgctagatacacaagagatggcagagtcaaagtacaagaaatgggaaaaggatcctgccccatatggctgggatgtttttaatcagaaaacattgtatgatgcatacaaaaagcgaacaaagaatattgatattgacttggaagattacaataagatgaaagaagaagatccagagttctaccgtgaagcttccagccttcaatacgggaaggctccaaagatctcagaggataaaattgacaagatggtgaaggaactaaaggaccaggaagagaagaaaaagaaattcagcaggaggaggaggttccatgatgagaaggatattgactcgatcaatgaccgtaatgagcattttaacaagaagattgagcgagcttttggtaaatacacgctggagatcaaaaacaatctcgagcgaggaactgcattgcctgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

310

Amino Acids

36.46

Weight (kDa)

5.96

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	4 cut(s)	117, 539, 552, 656
AcsI	RAATTY	1 cut(s)	779
AfaI	GTAC	2 cut(s)	132, 527
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	79, 428, 695
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	4 cut(s)	101, 365, 683, 869
AluI	AGCT	4 cut(s)	101, 365, 683, 869
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	200, 264
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	4 cut(s)	117, 539, 552, 656
AlwNI	CAGNNNCTG	2 cut(s)	128, 209
Ama87I	CYCGRG	1 cut(s)	905
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	63, 170, 362
ApoI	RAATTY	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	757
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	242, 754
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	757
BaeGI	GKGCMC	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	75, 157, 374
BccI	CCATC	5 cut(s)	100, 208, 221, 505, 733
BciT130I	CCWGG	1 cut(s)	761
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	200, 264
BfaI	CTAG	4 cut(s)	191, 336, 458, 497
BglII	AGATCT	2 cut(s)	187, 714
BisI	GCNGC	3 cut(s)	64, 171, 363
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	65, 172, 364
Bme1390I	CCNGG	2 cut(s)	26, 761
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	4 cut(s)	384, 546, 708, 800
BmrFI	CCNGG	2 cut(s)	26, 761
BmsI	GCATC	3 cut(s)	50, 451, 583
BpmI	CTGGAG	1 cut(s)	908
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	920
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	761
BseGI	GGATG	4 cut(s)	41, 111, 324, 571
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	2 cut(s)	188, 732
BseRI	GAGGAG	5 cut(s)	263, 266, 269, 805, 808
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	75, 157, 374
BseYI	CCCAGC	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	200, 264
BsmI	GAATGC	2 cut(s)	43, 65
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	187, 731
BspLI	GGNNCC	4 cut(s)	384, 546, 708, 800
BspPI	GGATC	4 cut(s)	117, 539, 552, 656
BsrDI	GCAATG	1 cut(s)	920
BsrGI	TGTACA	1 cut(s)	130
BssMI	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	2 cut(s)	677, 836
Bst6I	CTCTTC	3 cut(s)	10, 423, 759
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	2 cut(s)	174, 718
BstF5I	GGATG	4 cut(s)	41, 111, 324, 571
BstKTI	GATC	7 cut(s)	112, 190, 547, 664, 717, 828, 894
BstMAI	GTCTC	2 cut(s)	200, 264
BstMBI	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 341
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	2 cut(s)	221, 496
BstSCI	CCNGG	2 cut(s)	24, 759
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	75, 157, 374
BstX2I	RGATCY	4 cut(s)	187, 544, 661, 714
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstYI	RGATCY	4 cut(s)	187, 544, 661, 714
BtsCI	GGATG	4 cut(s)	41, 111, 324, 571
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	2 cut(s)	128, 209
Cfr13I	GGNCC	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	131, 526
CviAII	CATG	3 cut(s)	218, 493, 803
CviQI	GTAC	2 cut(s)	131, 526
DdeI	CTNAG	2 cut(s)	174, 718
DpnI	GATC	7 cut(s)	111, 189, 546, 663, 716, 827, 893
DpnII	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
Eam1104I	CTCTTC	3 cut(s)	10, 423, 759
EarI	CTCTTC	3 cut(s)	10, 423, 759
Eco47I	GGWCC	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	759
EcoT22I	ATGCAT	2 cut(s)	43, 598
FaeI	CATG	3 cut(s)	221, 496, 806
FaiI	YATR	9 cut(s)	219, 263, 479, 494, 556, 558, 591, 598, 804
FatI	CATG	3 cut(s)	217, 492, 802
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	64, 171, 363
FokI	GGATG	4 cut(s)	28, 118, 331, 578
Fsp4HI	GCNGC	3 cut(s)	64, 171, 363
FspBI	CTAG	4 cut(s)	191, 336, 458, 497
GluI	GCNGC	3 cut(s)	64, 171, 363
GsaI	CCCAGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	908
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	221, 496, 806
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	4 cut(s)	125, 395, 518, 821
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	242, 754
Hpy166II	GTNNAC	3 cut(s)	22, 285, 452
Hpy188I	TCNGA	6 cut(s)	7, 105, 124, 205, 579, 721
Hpy188III	TCNNGA	4 cut(s)	191, 458, 665, 905
Hpy8I	GTNNAC	3 cut(s)	22, 285, 452
HpyAV	CCTTC	6 cut(s)	5, 260, 697, 701, 739, 805
HpyCH4III	ACNGT	2 cut(s)	677, 836
HpyCH4V	TGCA	8 cut(s)	22, 33, 41, 63, 362, 464, 596, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 341
HpyF3I	CTNAG	2 cut(s)	174, 718
Hsp92II	CATG	3 cut(s)	221, 496, 806
Kzo9I	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	3 cut(s)	75, 157, 374
LweI	GCATC	3 cut(s)	50, 451, 583
MaeI	CTAG	4 cut(s)	191, 336, 458, 497
MalI	GATC	7 cut(s)	111, 189, 546, 663, 716, 827, 893
MboI	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
MflI	RGATCY	4 cut(s)	187, 544, 661, 714
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	5 cut(s)	161, 311, 444, 729, 779
MlyI	GAGTC	2 cut(s)	527, 815
Mph1103I	ATGCAT	2 cut(s)	43, 598
MseI	TTAA	3 cut(s)	314, 573, 849
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 761
Mva1269I	GAATGC	2 cut(s)	43, 65
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	2 cut(s)	72, 341
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
NlaIII	CATG	3 cut(s)	221, 496, 806
NlaIV	GGNNCC	4 cut(s)	384, 546, 708, 800
NsiI	ATGCAT	2 cut(s)	43, 598
NspI	RCATGY	2 cut(s)	221, 496
PaeR7I	CTCGAG	1 cut(s)	905
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	43, 65
PfeI	GAWTC	2 cut(s)	125, 395
PkrI	GCNGC	3 cut(s)	65, 172, 364
PleI	GAGTC	2 cut(s)	526, 815
PpsI	GAGTC	2 cut(s)	526, 815
Psp6I	CCWGG	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	4 cut(s)	384, 546, 708, 800
PspPI	GGNCC	1 cut(s)	757
PstNI	CAGNNNCTG	2 cut(s)	128, 209
PsuI	RGATCY	4 cut(s)	187, 544, 661, 714
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	132, 527
RsaNI	GTAC	2 cut(s)	131, 526
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	314, 573, 849
SatI	GCNGC	3 cut(s)	64, 171, 363
Sau3AI	GATC	7 cut(s)	109, 187, 544, 661, 714, 825, 891
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	527, 815
ScrFI	CCNGG	2 cut(s)	26, 761
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	6 cut(s)	103, 367, 388, 685, 800, 871
SfaNI	GCATC	3 cut(s)	50, 451, 583
Sfr274I	CTCGAG	1 cut(s)	905
SinI	GGWCC	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	5 cut(s)	161, 311, 444, 729, 779
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	4 cut(s)	191, 336, 458, 497
StyD4I	CCNGG	2 cut(s)	24, 759
TaaI	ACNGT	2 cut(s)	677, 836
TaqI	TCGA	2 cut(s)	824, 906
TasI	AATT	5 cut(s)	161, 311, 444, 729, 779
TatI	WGTACW	2 cut(s)	130, 525
TfiI	GAWTC	2 cut(s)	125, 395
Tru1I	TTAA	3 cut(s)	314, 573, 849
Tru9I	TTAA	3 cut(s)	314, 573, 849
TseI	GCWGC	3 cut(s)	63, 170, 362
TspDTI	ATGAA	6 cut(s)	24, 228, 335, 341, 494, 665
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	757
XapI	RAATTY	1 cut(s)	779
XbaI	TCTAGA	2 cut(s)	190, 457
XceI	RCATGY	2 cut(s)	221, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	905
XspI	CTAG	4 cut(s)	191, 336, 458, 497
Zsp2I	ATGCAT	2 cut(s)	43, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.