Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002812

Physical Location & Seq

Genomic Coordinates Reverse (-)

15289128 .. 15290828

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCTGATGAGCAAAGAGTTCACCCGGATTGCAGAAATGCATCCAATCCATACCATGAATGCAGCGAGTATTGCTTTACAGTTATTGCCGAAGCCAAGGCTCGAATGCCTCAAATCCAATCAGATCCTGAAGAACATGCTGATGATGGCGATGCCTATCCTCAAGAACATGCTGATGATGATGATGCCCATCCTCTCGAGGAGAATATGGAAGGAGACTTCCAAAACTTAACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCGAAGAAACAAAATCAAACGGAGATTACGGCCGAAAAGAAAAGACTGGAACCCCGACAAGAGTCCAGGGGAATTTCGAAACAAAAATGGGTTGAAGAGAGGAAGAAAAGAATCGGCAAACTTCTAGATGCCAATGGTTTGGATATGAAAAGTGCAAACATGCTAGATACGCAAGAGATGGCAGAGGAAAAATATAAGAAATGGGAAAAGGATCCTGCCCCAGTTGGCTGGGATGTTTTCAATCAGAAAACTCTGTACAATGCATACAAAAAGCGGACGAAGAACATTGATATTGACTTGGAAGAATACAATAGGATGAAAGAAGCTGATCCGGAGTTCTATCGTGAAGCTTCCAGCCTCCAATATGGGAAGGCTCCAAAGATATCAGAGGATAAACTTGACAAGATGGTGAAGGAACTCAAGGATCGGGAAGAGAAGAAGGCTTCCTTCAGCAGGAGGAGGAGGTTCCACGATGAGAAAGATATTGACTCAATCAATGACCGCAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGTTGGAAATCAAAAACAATCTTGAGCGCGGAACTGCATTGCCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SYF2

Protein Analysis

293

Amino Acids

34.39

Weight (kDa)

6.09

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16860 AT2G16860
fragaria_vesca	FvH4_2g15441 FvH4_2g15441
malus_domestica	MD05G1122700.v1.1
prunus_persica	Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1 Prupe.8G166600_v2.0.a1
pyrus_communis	pycom05g11700
rosa_chinensis	RchiOBHm_Chr1g0323251 RchiOBHm_Chr2g0134101 RchiOBHm_Chr6g0278411 RchiOBHm_Chr6g0295751
rosa_laevigata	RLG00000013230 RLG00000019262 RLG00000030344
rosa_multiflora	Rmu_sc0002132.1_g000004 Rmu_sc0002263.1_g000069 Rmu_sc0003092.1_g000001 Rmu_sc0003837.1_g000015
rosa_roxburghii	Rroxscaffold_4G00326720 Rroxscaffold_7G00190370
rosa_rugosa	Rorug01G0037000 Rorug01G0037100
rosa_samantha	Rh1AG054300 Rh1BG047000 Rh1CG055200 Rh1DG059100 Rh2AG367700 Rh2BG373900 Rh6AG042600 Rh6AG226100 Rh6BG230200 Rh6CG233400 Rh6DG224700
rosa_wichuraiana	Rw1G004730 Rw6G003670 Rw6G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	858
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	4 cut(s)	254, 553, 781, 858
AclWI	GGATC	5 cut(s)	119, 485, 498, 602, 711
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	150, 712
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	732
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	3 cut(s)	374, 520, 796
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	605, 629
AluI	AGCT	2 cut(s)	605, 629
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	5 cut(s)	119, 485, 498, 602, 711
AlwNI	CAGNNNCTG	1 cut(s)	128
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	858
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	14, 287, 700
AsuII	TTCGAA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	4 cut(s)	140, 198, 451, 679
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	404, 443
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	26, 346
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	4 cut(s)	330, 492, 654, 746
BmrFI	CCNGG	2 cut(s)	26, 346
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	4 cut(s)	50, 142, 175, 397
BmuI	ACTGGG	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	3 cut(s)	147, 683, 872
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	156, 189
BsaJI	CCNNGG	2 cut(s)	96, 345
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	732
Bse1I	ACTGG	2 cut(s)	330, 500
Bse3DI	GCAATG	2 cut(s)	790, 866
Bse8I	GATNNNNATC	2 cut(s)	156, 189
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	96, 345
BseGI	GGATG	4 cut(s)	41, 190, 517, 600
BseJI	GATNNNNATC	2 cut(s)	156, 189
BseLI	CCNNNNNNNGG	1 cut(s)	732
BseMI	GCAATG	2 cut(s)	790, 866
BseNI	ACTGG	2 cut(s)	330, 500
BseRI	GAGGAG	3 cut(s)	215, 751, 754
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	858
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	26, 611
BslI	CCNNNNNNNGG	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	2 cut(s)	65, 111
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	124, 490, 607, 703
BspACI	CCGC	4 cut(s)	254, 553, 781, 858
BspANI	GGCC	1 cut(s)	311
BspEI	TCCGGA	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	858
BspLI	GGNNCC	4 cut(s)	330, 492, 654, 746
BspPI	GGATC	5 cut(s)	119, 485, 498, 602, 711
BspT104I	TTCGAA	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	790, 866
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	330, 500
BssECI	CCNNGG	2 cut(s)	96, 345
BssMI	GATC	4 cut(s)	124, 490, 607, 703
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	3 cut(s)	236, 369, 705
BstAUI	TGTACA	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	813
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	4 cut(s)	41, 190, 517, 600
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	4 cut(s)	127, 493, 610, 706
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	4 cut(s)	124, 490, 607, 703
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 448
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	3 cut(s)	140, 173, 442
BstPAI	GACNNNNGTC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	24, 344
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	124, 490
BstXI	CCANNNNNNTGG	2 cut(s)	418, 507
BstYI	RGATCY	2 cut(s)	124, 490
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	41, 190, 517, 600
Cac8I	GCNNGC	1 cut(s)	813
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	858
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	4 cut(s)	56, 137, 170, 439
CviQI	GTAC	1 cut(s)	535
DpnI	GATC	4 cut(s)	126, 492, 609, 705
DpnII	GATC	4 cut(s)	124, 490, 607, 703
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	236, 369, 705
EarI	CTCTTC	3 cut(s)	236, 369, 705
EciI	GGCGGA	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	663
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	150, 712
Eco88I	CYCGRG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	2 cut(s)	43, 544
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	59, 140, 173, 442
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FatI	CATG	4 cut(s)	55, 136, 169, 438
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	4 cut(s)	28, 177, 524, 607
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	404, 443
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	26, 611
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	4 cut(s)	59, 140, 173, 442
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	3 cut(s)	341, 390, 767
HpaII	CCGG	2 cut(s)	26, 611
HphI	GGTGA	3 cut(s)	14, 287, 700
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	7, 124, 525, 667
Hpy188III	TCNNGA	8 cut(s)	128, 164, 197, 404, 611, 623, 707, 851
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	206, 643, 685, 712, 736
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	6 cut(s)	33, 41, 63, 434, 542, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 448
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	4 cut(s)	59, 140, 173, 442
HspAI	GCGC	1 cut(s)	856
Kpn2I	TCCGGA	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	124, 490, 607, 703
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	4 cut(s)	50, 142, 175, 397
MaeI	CTAG	2 cut(s)	404, 443
MaeII	ACGT	1 cut(s)	830
MalI	GATC	4 cut(s)	126, 492, 609, 705
MboI	GATC	4 cut(s)	124, 490, 607, 703
MflI	RGATCY	2 cut(s)	124, 490
MluCI	AATT	4 cut(s)	248, 257, 269, 351
MlyI	GAGTC	2 cut(s)	350, 761
MmeI	TCCRAC	1 cut(s)	813
Mph1103I	ATGCAT	2 cut(s)	43, 544
MroI	TCCGGA	1 cut(s)	610
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	141, 174
MspI	CCGG	2 cut(s)	26, 611
MspR9I	CCNGG	2 cut(s)	26, 346
Mva1269I	GAATGC	2 cut(s)	65, 111
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	72, 448
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	124, 490, 607, 703
NlaIII	CATG	4 cut(s)	59, 140, 173, 442
NlaIV	GGNNCC	4 cut(s)	330, 492, 654, 746
NsiI	ATGCAT	2 cut(s)	43, 544
NspI	RCATGY	3 cut(s)	140, 173, 442
NspV	TTCGAA	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	197
PctI	GAATGC	2 cut(s)	65, 111
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	349, 761
PpsI	GAGTC	2 cut(s)	349, 761
PshAI	GACNNNNGTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	330, 492, 654, 746
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	124, 490
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	141, 174
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	4 cut(s)	124, 490, 607, 703
SchI	GAGTC	2 cut(s)	350, 761
ScrFI	CCNGG	2 cut(s)	26, 346
SetI	ASST	4 cut(s)	607, 631, 746, 833
SfaNI	GCATC	4 cut(s)	50, 142, 175, 397
Sfr274I	CTCGAG	1 cut(s)	197
SfuI	TTCGAA	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	141, 174
SmlI	CTYRAG	4 cut(s)	162, 197, 698, 851
SmoI	CTYRAG	4 cut(s)	162, 197, 698, 851
Sse9I	AATT	4 cut(s)	248, 257, 269, 351
SsiI	CCGC	4 cut(s)	254, 553, 781, 858
SspMI	CTAG	2 cut(s)	404, 443
StyD4I	CCNGG	2 cut(s)	24, 344
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	3 cut(s)	103, 198, 356
TasI	AATT	4 cut(s)	248, 257, 269, 351
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	72, 440, 611
TspGWI	ACGGA	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	730
XapI	RAATTY	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	3 cut(s)	140, 173, 442
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	2 cut(s)	404, 443
Zsp2I	ATGCAT	2 cut(s)	43, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.