Rw1G004730

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002812
Physical Location & Seq
Reverse (-)
9075101 .. 9075991
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004730.1

Sequence Viewer

Length: 762 bp
ATGGATCTAAATGATGTAAATCAACTGCTGGATTCTGTACAAGATAATAGTGGCAACTCAAACTTAGAGGTTGCTCCTCAGCGACAGAAAGAAGATGCTGATAATGGTGTTGACCACACAAAGTTGACAGGGAGGAAGAAAAAATTGAAGGAATTGCAGAAGAAGGTGAAAGAGGCTATAGATAAGAATCAAACACAGGTTAAAGCCGAACAGAAAAGAATGGAGCCTCCAGAAGAACCGTCGAGGGGGATTTCGAAACAAAAATGGCTTGAAGAGAGGGAGAGAAAGATGGGGAAACTCTTGGATGCAAATGGTTTGGATTTGAAAAGAGCATACATGCTAGATACACAAGAGATGGCCGAGGCAAAATACAAGAGATGGAAAAAGAAACCTGCACCATGTGGCTGGGATGTTTTTAATTCGAAAACATTGTACAATGCACACAAAAAACGAACAAACAAGATCGAAGTTGACATGGAAGAATACAATAAGATGAAACAGGAAGGAGCTTTTAGCTGCCTCGAAAATGGAAAGACTCCGAAGGTCTCGGAGGAGAAAGTTGACAAGATGTTGCAGGAGCTCAAGGAACTCGAAGAGAAGAAAAAGAAATTTAGCAGGAGGAGGAGGTTCCATGTGGACAAGGATATTGACTCGATCAATGACCGCAATGAGCATTTCAACAAGAAGATTGAGAGAGCCTTTGGTAAGTACACTTTGGAAATCAAAAACAATCTCGAGCGAGGTACTGCATTGCCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SYF2

Protein Analysis

253

Amino Acids

29.72

Weight (kDa)

9.35

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYF2 PF08231 104 - 246 6e-34 SYF2 splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AciI CCGC 1 cut(s) 664
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 608
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 4 cut(s) 39, 434, 710, 745
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 4 cut(s) 148, 272, 325, 679
AluBI AGCT 3 cut(s) 509, 516, 580
AluI AGCT 3 cut(s) 509, 516, 580
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 516
ApoI RAATTY 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 178
AsuII TTCGAA 2 cut(s) 254, 422
AvaI CYCGRG 1 cut(s) 734
BanII GRGCYC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 503
BccI CCATC 3 cut(s) 283, 349, 372
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 734
BmiI GGNNCC 2 cut(s) 225, 629
BmsI GCATC 2 cut(s) 85, 295
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 2 cut(s) 254, 422
BpuEI CTTGAG 1 cut(s) 566
BsaBI GATNNNNATC 2 cut(s) 18, 186
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse3DI GCAATG 2 cut(s) 673, 749
Bse8I GATNNNNATC 2 cut(s) 18, 186
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 2 cut(s) 310, 415
BseJI GATNNNNATC 2 cut(s) 18, 186
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 2 cut(s) 673, 749
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 4 cut(s) 66, 566, 634, 637
BseXI GCAGC 1 cut(s) 503
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 734
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 550
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 2 cut(s) 254, 422
Bsp1286I GDGCHC 1 cut(s) 582
Bsp1407I TGTACA 2 cut(s) 37, 432
Bsp143I GATC 3 cut(s) 4, 462, 654
BspACI CCGC 1 cut(s) 664
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 225, 629
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 254, 422
BspTNI GGTCTC 1 cut(s) 550
BsrDI GCAATG 2 cut(s) 673, 749
BsrGI TGTACA 2 cut(s) 37, 432
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 3 cut(s) 4, 462, 654
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 267, 588
BstAUI TGTACA 2 cut(s) 37, 432
BstBI TTCGAA 2 cut(s) 254, 422
BstDEI CTNAG 2 cut(s) 64, 78
BstF5I GGATG 2 cut(s) 310, 415
BstKTI GATC 3 cut(s) 7, 465, 657
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 3 cut(s) 4, 462, 654
BstNSI RCATGY 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 2 cut(s) 310, 415
BveI ACCTGC 1 cut(s) 400
Csp6I GTAC 4 cut(s) 38, 433, 709, 744
CviAII CATG 4 cut(s) 337, 399, 475, 632
CviQI GTAC 4 cut(s) 38, 433, 709, 744
DdeI CTNAG 2 cut(s) 64, 78
DpnI GATC 3 cut(s) 6, 464, 656
DpnII GATC 3 cut(s) 4, 462, 654
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 267, 588
EarI CTCTTC 2 cut(s) 267, 588
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 4 cut(s) 340, 402, 478, 635
FaiI YATR 6 cut(s) 179, 334, 338, 400, 476, 633
FatI CATG 4 cut(s) 336, 398, 474, 631
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 2 cut(s) 317, 422
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 1 cut(s) 341
GluI GCNGC 1 cut(s) 517
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 359
Hin1II CATG 4 cut(s) 340, 402, 478, 635
HincII GTYRAC 4 cut(s) 112, 126, 472, 562
HindII GTYRAC 4 cut(s) 112, 126, 472, 562
HinfI GANTC 4 cut(s) 32, 187, 535, 650
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 6 cut(s) 112, 126, 472, 562, 637, 711
Hpy188I TCNGA 2 cut(s) 540, 550
Hpy188III TCNNGA 2 cut(s) 230, 734
Hpy8I GTNNAC 6 cut(s) 112, 126, 472, 562, 637, 711
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 4 cut(s) 142, 157, 497, 535
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 157, 308, 395, 440, 574, 749
HpyF3I CTNAG 2 cut(s) 64, 78
Hsp92II CATG 4 cut(s) 340, 402, 478, 635
Kzo9I GATC 3 cut(s) 4, 462, 654
LmnI GCTCC 4 cut(s) 79, 223, 506, 577
LpnPI CCDG 9 cut(s) 14, 114, 182, 243, 391, 405, 485, 560, 601
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 2 cut(s) 85, 295
MaeI CTAG 1 cut(s) 341
MalI GATC 3 cut(s) 6, 464, 656
MboI GATC 3 cut(s) 4, 462, 654
MboII GAAGA 9 cut(s) 104, 148, 172, 245, 284, 491, 605, 610, 697
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 4 cut(s) 143, 152, 418, 608
MlyI GAGTC 2 cut(s) 529, 644
MseI TTAA 3 cut(s) 201, 417, 760
NdeII GATC 3 cut(s) 4, 462, 654
NlaIII CATG 4 cut(s) 340, 402, 478, 635
NlaIV GGNNCC 2 cut(s) 225, 629
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 1 cut(s) 340
NspV TTCGAA 2 cut(s) 254, 422
PaeR7I CTCGAG 1 cut(s) 734
PfeI GAWTC 2 cut(s) 32, 187
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 2 cut(s) 529, 644
PpsI GAGTC 2 cut(s) 529, 644
Psp124BI GAGCTC 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 225, 629
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 4 cut(s) 39, 434, 710, 745
RsaNI GTAC 4 cut(s) 38, 433, 709, 744
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 201, 417, 760
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 3 cut(s) 4, 462, 654
SchI GAGTC 2 cut(s) 529, 644
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 2 cut(s) 85, 295
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 734
SfuI TTCGAA 2 cut(s) 254, 422
SlaI CTCGAG 1 cut(s) 734
SmlI CTYRAG 2 cut(s) 581, 734
SmoI CTYRAG 2 cut(s) 581, 734
Sse9I AATT 4 cut(s) 143, 152, 418, 608
SsiI CCGC 1 cut(s) 664
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 582
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 8 cut(s) 242, 254, 422, 465, 522, 591, 653, 735
TasI AATT 4 cut(s) 143, 152, 418, 608
TatI WGTACW 3 cut(s) 37, 432, 708
TfiI GAWTC 2 cut(s) 32, 187
Tru1I TTAA 3 cut(s) 201, 417, 760
Tru9I TTAA 3 cut(s) 201, 417, 760
TseI GCWGC 1 cut(s) 516
TspDTI ATGAA 1 cut(s) 509
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 734
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.