Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

7361336 .. 7362157

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16953.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

AGTGCAAACATTACTAAAGGAAACCTTGATGTCACAACTAATGCTTGTGAGGCCATAGGAGAATTAGCGGTAAAGGGTGTCAATAACGCACTAGTTGAGAACAGTGCAATTACCCTCGGGAGACTAGCATTGATTCGACCAGACTTAGTTGCACCATACATGAAGCCATGGTCCATGGCATTGTCAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031047 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

64

Amino Acids

6.76

Weight (kDa)

7.87

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	115
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 125
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	115, 167, 174
BseDI	CCNNGG	3 cut(s)	115, 167, 174
BshFI	GGCC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	116
Bsp19I	CCATGG	2 cut(s)	167, 174
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	115, 167, 174
BssT1I	CCWWGG	2 cut(s)	167, 174
Bst4CI	ACNGT	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	167, 174
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	167, 174
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	3 cut(s)	160, 168, 175
CviJI	RGCY	2 cut(s)	53, 166
CviKI_1	RGCY	2 cut(s)	53, 166
DdeI	CTNAG	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	167, 174
Eco47I	GGWCC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	167, 174
ErhI	CCWWGG	2 cut(s)	167, 174
FaeI	CATG	3 cut(s)	163, 171, 178
FaiI	YATR	5 cut(s)	56, 157, 161, 169, 176
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	3 cut(s)	159, 167, 174
FspBI	CTAG	2 cut(s)	92, 125
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	163, 171, 178
HinfI	GANTC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	5, 107, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	163, 171, 178
LpnPI	CCDG	1 cut(s)	153
MaeI	CTAG	2 cut(s)	92, 125
MaeIII	GTNAC	1 cut(s)	31
MluCI	AATT	2 cut(s)	62, 108
MnlI	CCTC	2 cut(s)	43, 125
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	2 cut(s)	167, 174
NlaIII	CATG	3 cut(s)	163, 171, 178
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	171
SetI	ASST	1 cut(s)	27
SinI	GGWCC	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	2 cut(s)	62, 108
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	92, 125
StyI	CCWWGG	2 cut(s)	167, 174
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	62, 108
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	171
XspI	CTAG	2 cut(s)	92, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.