Rw2G041470

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005236
Physical Location & Seq
Reverse (-)
67473177 .. 67473398
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041470.1

Sequence Viewer

Length: 192 bp
ATGAGTTCCAGCACTAATTCCGCAGGACCTTACGTCCAGGCTCCGCCTCCTGCCGGCTATCCCACCATGAGAGACGACTCCGATTTGCCCCAGATTCATGGTCGTGTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGTGTTGCTGTTGTATGCTCGATGCTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

63

Amino Acids

6.68

Weight (kDa)

5.48

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 11 - 63 6.3e-12 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 44
AfiI CCNNNNNNNGG 1 cut(s) 53
AhdI GACNNNNNGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 144, 152
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 131, 139
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 66
BisI GCNGC 2 cut(s) 145, 153
BlsI GCNGC 2 cut(s) 146, 154
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 53
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 131, 139
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BspACI CCGC 2 cut(s) 21, 44
BspLI GGNNCC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 55, 184
BstMAI GTCTC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 131, 139
BstXI CCANNNNNNTGG 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 55, 184
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 26
CviAII CATG 2 cut(s) 67, 98
CviJI RGCY 4 cut(s) 41, 57, 132, 144
CviKI_1 RGCY 4 cut(s) 41, 57, 132, 144
DriI GACNNNNNGTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 70, 101
FaiI YATR 3 cut(s) 68, 99, 173
FatI CATG 2 cut(s) 66, 97
Fnu4HI GCNGC 2 cut(s) 145, 153
Fsp4HI GCNGC 2 cut(s) 145, 153
GluI GCNGC 2 cut(s) 145, 153
HapII CCGG 1 cut(s) 54
Hin1II CATG 2 cut(s) 70, 101
HinfI GANTC 2 cut(s) 77, 94
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 70, 101
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 9, 22, 23, 50, 63, 67, 104, 121
Lsp1109I GCAGC 2 cut(s) 131, 139
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 33
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NaeI GCCGGC 1 cut(s) 55
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 70, 101
NlaIV GGNNCC 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 146, 154
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 2 cut(s) 145, 153
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 38
SetI ASST 2 cut(s) 31, 36
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 21, 44
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 120
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 16
TfiI GAWTC 1 cut(s) 94
TseI GCWGC 2 cut(s) 144, 152
TspDTI ATGAA 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.