Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Reverse (-)

31319400 .. 31319769

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39682.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGTTCAAGCACAAACTCCGCAGCAGCGTACACCGCTCCGGCTTCGCAACAAGGACCTTACGTCCAAGCTCCGCCTCCCGCCGGCTATCCCACTCTGAGAGTCGACGACTCCGACGTGCACCAAAGCCATGGACGTCGTTTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCAGCCTTTATATTATGTGATGAAATTATGGACAATGTGTATTGGATCGATGCTCATATACGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

85

Amino Acids

9.16

Weight (kDa)

5.78

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	4 cut(s)	21, 36, 74, 81
AclWI	GGATC	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	2 cut(s)	32, 250
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	4 cut(s)	23, 26, 180, 188
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	35, 38, 167, 200
BccI	CCATC	1 cut(s)	158
BisI	GCNGC	4 cut(s)	24, 27, 181, 189
BlsI	GCNGC	4 cut(s)	25, 28, 182, 190
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	56
BmsI	GCATC	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	130, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	130, 156
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	35, 38, 167, 200
BsgI	GTGCAG	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	41, 84
BslI	CCNNNNNNNGG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	4 cut(s)	21, 36, 74, 81
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	234
BspPI	GGATC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	130, 156
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	2 cut(s)	130, 156
BstACI	GRCGYC	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	123
BstSNI	TACGTA	1 cut(s)	248
BstV1I	GCAGC	4 cut(s)	35, 38, 167, 200
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	31, 249
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	7 cut(s)	44, 71, 87, 129, 168, 180, 191
CviKI_1	RGCY	7 cut(s)	44, 71, 87, 129, 168, 180, 191
CviQI	GTAC	2 cut(s)	31, 249
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	130, 156
Eco47I	GGWCC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	130, 156
ErhI	CCWWGG	2 cut(s)	130, 156
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	132, 197, 202, 215, 243, 245
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	24, 27, 181, 189
Fsp4HI	GCNGC	4 cut(s)	24, 27, 181, 189
GluI	GCNGC	4 cut(s)	24, 27, 181, 189
HapII	CCGG	2 cut(s)	41, 84
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	102, 110
HpaII	CCGG	2 cut(s)	41, 84
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	33, 106, 121
Hpy188I	TCNGA	2 cut(s)	99, 115
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	3 cut(s)	33, 106, 121
Hpy99I	CGWCG	3 cut(s)	110, 119, 141
HpyAV	CCTTC	1 cut(s)	169
HpyCH4IV	ACGT	4 cut(s)	63, 117, 136, 247
HpyCH4V	TGCA	2 cut(s)	121, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	4 cut(s)	63, 117, 136, 247
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	43, 76
LpnPI	CCDG	3 cut(s)	54, 97, 157
Lsp1109I	GCAGC	4 cut(s)	35, 38, 167, 200
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	4 cut(s)	63, 117, 136, 247
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	104, 111
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	87
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	1 cut(s)	253
MspI	CCGG	2 cut(s)	41, 84
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 114
PdiI	GCCGGC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	25, 28, 182, 190
PleI	GAGTC	2 cut(s)	104, 110
PpsI	GAGTC	2 cut(s)	104, 110
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
RsaI	GTAC	2 cut(s)	32, 250
RsaNI	GTAC	2 cut(s)	31, 249
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	4 cut(s)	24, 27, 181, 189
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	104, 111
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	61, 66, 73, 120, 139, 250
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	56
SnaBI	TACGTA	1 cut(s)	248
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	4 cut(s)	21, 36, 74, 81
StyI	CCWWGG	2 cut(s)	130, 156
TaiI	ACGT	4 cut(s)	66, 120, 139, 250
TaqI	TCGA	2 cut(s)	105, 234
TasI	AATT	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseI	GCWGC	4 cut(s)	23, 26, 180, 188
TspDTI	ATGAA	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.