Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

15446722 .. 15449034

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11920.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGCTTCGGATGTCCGGCAGAGTGGATTTGCACTACTTGGGGATCGATCTTGCAAGAGTATGCCCAGTTCACTTGCAACCTCGTTTGCCAGAATTTCTTGATATCGCAGCCAAGCAACTGAATACTCCTAAGCTGCAAGAAACTGTTTCAGTTGCAAACAATGCATGTTGGGCCATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCAATTGTTCTGACAGTTATCTCTTGCTTAGTTCAAATCCTTCAACATGCAGAGGAGCTGAACAAGTCACTAATTGAAAACAGTGCTATCACCCTTGGGAGGCTTGCGTGGGTCTGTCCAGAGCTTGTGGCTCCCCATATGGAGCATTTCATGCAACGATGGTGCATTGCTTTGTCAATGATACGTGATGATGTAGAAAAGGAGGATGCCTTCCGAGGTCTCTGTGCTTTGGTTAGAACCAATCCATCCGGAGCATTGAATTCACTCATTTATCTGTGCAATGCTATTGCAAGTTGGCATGAAATACGGAGTGAAGAGCTTCATAATGAAGTTCACCAGGTGTTGCATGGTTATAAGCAGATGCTTACGAATGGAGGAGCGTGGGACCAATGTATGTCTGCCTTGGTGCCACCAGTGAAGGAAAAGCTTTCAAAAATATACCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

222

Amino Acids

24.88

Weight (kDa)

6.3

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	622
AccIII	TCCGGA	1 cut(s)	464
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	95, 210, 475
AdeI	CACNNNGTG	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	251, 260, 293, 475, 648
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	136, 274, 340, 535, 643
AluI	AGCT	5 cut(s)	136, 274, 340, 535, 643
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	464
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	110, 136
ApoI	RAATTY	3 cut(s)	95, 210, 475
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	174, 601
AsuHPI	GGTGA	2 cut(s)	298, 542
AvaII	GGWCC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	122, 123
BccI	CCATC	2 cut(s)	369, 469
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	111, 137
BlsI	GCNGC	2 cut(s)	112, 138
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	174, 601
BmiI	GGNNCC	3 cut(s)	348, 602, 624
BmrFI	CCNGG	1 cut(s)	554
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	2 cut(s)	412, 567
BmuI	ACTGGG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	310, 430, 618
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	68, 629
Bse3DI	GCAATG	2 cut(s)	381, 502
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	554
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	310, 430, 618
BseGI	GGATG	3 cut(s)	18, 427, 461
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	2 cut(s)	381, 502
BseNI	ACTGG	2 cut(s)	68, 629
BseRI	GAGGAG	2 cut(s)	284, 606
BseXI	GCAGC	2 cut(s)	122, 123
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	622
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	18, 465
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	440
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	2 cut(s)	45, 49
BspANI	GGCC	1 cut(s)	176
BspDI	ATCGAT	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	348, 602, 624
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	381, 502
BsrI	ACTGG	2 cut(s)	68, 629
BssECI	CCNNGG	3 cut(s)	310, 430, 618
BssMI	GATC	2 cut(s)	45, 49
BssT1I	CCWWGG	2 cut(s)	310, 618
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	3 cut(s)	148, 232, 299
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	2 cut(s)	164, 367
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	132, 244
BstF5I	GGATG	3 cut(s)	18, 427, 461
BstKTI	GATC	2 cut(s)	48, 52
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	45, 49
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 367
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	2 cut(s)	171, 266
BstSCI	CCNGG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	122, 123
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	18, 427, 461
BtsIMutI	CAGTG	2 cut(s)	304, 636
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	174, 601
ClaI	ATCGAT	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	552
CviAII	CATG	5 cut(s)	168, 263, 367, 515, 563
CviJI	RGCY	9 cut(s)	113, 136, 176, 274, 319, 340, 347, 535, 643
CviKI_1	RGCY	9 cut(s)	113, 136, 176, 274, 319, 340, 347, 535, 643
DdeI	CTNAG	2 cut(s)	132, 244
DpnI	GATC	2 cut(s)	47, 51
DpnII	GATC	2 cut(s)	45, 49
DraIII	CACNNNGTG	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	310, 618
Eco31I	GGTCTC	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	310, 618
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	310, 618
FaeI	CATG	5 cut(s)	171, 266, 370, 518, 566
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	5 cut(s)	167, 262, 366, 514, 562
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	111, 137
FokI	GGATG	3 cut(s)	25, 434, 448
Fsp4HI	GCNGC	2 cut(s)	111, 137
GluI	GCNGC	2 cut(s)	111, 137
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	18, 465
Hin1II	CATG	5 cut(s)	171, 266, 370, 518, 566
HindIII	AAGCTT	1 cut(s)	641
HpaII	CCGG	2 cut(s)	18, 465
HphI	GGTGA	2 cut(s)	298, 542
Hpy166II	GTNNAC	2 cut(s)	73, 550
Hpy188I	TCNGA	3 cut(s)	12, 228, 431
Hpy188III	TCNNGA	4 cut(s)	101, 206, 335, 465
Hpy8I	GTNNAC	2 cut(s)	73, 550
HpyAV	CCTTC	3 cut(s)	266, 436, 628
HpyCH4III	ACNGT	3 cut(s)	148, 232, 299
HpyCH4IV	ACGT	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 367
HpyF3I	CTNAG	2 cut(s)	132, 244
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	5 cut(s)	171, 266, 370, 518, 566
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	45, 49
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	271, 352, 358, 467, 593
LpnPI	CCDG	8 cut(s)	31, 81, 105, 348, 478, 539, 566, 642
Lsp1109I	GCAGC	2 cut(s)	122, 123
LweI	GCATC	2 cut(s)	412, 567
MabI	ACCWGGT	1 cut(s)	552
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	2 cut(s)	47, 51
MboI	GATC	2 cut(s)	45, 49
MboII	GAAGA	1 cut(s)	542
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	6 cut(s)	95, 185, 210, 219, 288, 475
MnlI	CCTC	6 cut(s)	93, 262, 309, 412, 425, 584
Mph1103I	ATGCAT	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	195
MspI	CCGG	2 cut(s)	18, 465
MspR9I	CCNGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 367
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	2 cut(s)	45, 49
NlaIII	CATG	5 cut(s)	171, 266, 370, 518, 566
NlaIV	GGNNCC	3 cut(s)	348, 602, 624
NmuCI	GTSAC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	2 cut(s)	171, 266
PciSI	GCTCTTC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	534
PkrI	GCNGC	2 cut(s)	112, 138
Ppu21I	YACGTR	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	348, 602, 624
PspPI	GGNCC	2 cut(s)	174, 601
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	111, 137
Sau3AI	GATC	2 cut(s)	45, 49
Sau96I	GGNCC	2 cut(s)	174, 601
ScrFI	CCNGG	1 cut(s)	554
SexAI	ACCWGGT	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	412, 567
SinI	GGWCC	1 cut(s)	601
Sse9I	AATT	6 cut(s)	95, 185, 210, 219, 288, 475
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	2 cut(s)	310, 618
TaaI	ACNGT	3 cut(s)	148, 232, 299
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	48
TasI	AATT	6 cut(s)	95, 185, 210, 219, 288, 475
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	304, 636
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	2 cut(s)	110, 136
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	4 cut(s)	355, 527, 531, 558
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	2 cut(s)	304, 636
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	3 cut(s)	95, 210, 475
XceI	RCATGY	2 cut(s)	171, 266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.