Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

56607349 .. 56609382

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0441500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAGGTTCAAAAAACTAGCCACCAACTTCTTCACACCTACTTGTTTCAAGGCCAAAAGCCAGACATCAGAACATAAATCCCAGTTATCATCCAAAGAGATCACTATTTCACGTAGATTGTCACTTTCGGATGTGAGCAATTCATCAATCTGCACTGTCCTGAGTGACTTATCAAATTCGCTTATCGGATCAAATCTTCATATCTTTGCCCACAATGAGCTCGAAAAGATCACTCAAAGCTTTTCTAAGAGCAACTATCTTGGAGAAGGCGGGTTCGGGAAAGTGTACAAAGGCTTTGTTGATGACAAGCTTAGGCCTGGCTTGGAAGCTCAACCTGTTGCTGTTAAGGTTTTGGATTTGGATGGCACGCAAGGTCATAGAGAGTGGCTGGCTGAAGTGATTTTTCTTGGGCAATTGAAGCACCCTAATCTTGTGAACTTGATTGGGTACTGCTGTGAAGATGAACATAGGCTTCTCGTCTATGAATACATGGAGAGAGGCAACTTAGACAACAAACTATTCAAATGTTATTCTGGAACCTTGCCTTGGTTGACAAGAGTCAAAATAGCAATTGGAGCTGCTAAAGGCCTCAGTTTCCTCCATGAGGAAGAAAAGCCAGTCATATATAGAGATTTCAAGGCTTCAAATATCCTACTAGACTGTGATTACACAGCTACGCTCTCTGATTTCGGTCTAGCTATAGATGGCCCGGAAGGCGATGAAACACATGTCACAACGCATGTCATGGGTACTCATGGCTATGCAGCTCCAGAATACATCACGACAGGTCATTTAACAACAATGAGCGACGTCTATAGCTTCGGTGTAGTTCTTTTAGAGCTTCTAACAGGTAGAAGATCCATGGATGAGAGCCGTACTTTTAGAGAACAGAACCTAGTGGAGTGGGCCAAGCCATTTTTGAAGGACTCGCACAAACTTGACCGTGTGATGGACCAAAGACTCGAGGGTCAGTACTCTACCGAAGGGGCTAAAAAGGCGGCTGCATTGGCTCATCAGTGCCTGAGCCATAACCCCAAGTCTAGACCAACAATGAGCACTGTGGTCAAGACCTTAGAGCCTCTAATGAACTTGAATGACATACCAATTGGACCCTTTGTGTATGTCGTTCCAACTGAATCAGGAAAAGAAGGTCAAATTGGGTGTCATGATAAGGTAAAAAATGACAACAAAGGTGAAGTAAAAGAGGGAAGGTTGGAGAAATTGAAGGGCAGCCACCGGAGACGAAAAGGTCAGAGGCATAGGCATCGGTCTAGTACTGTCTTTTCGGATACTGCTCTATACAAAGTTCTCGGAACTGGTTTATACTCTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

445

Amino Acids

49.9

Weight (kDa)

8.7

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 356	8.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 358	2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	966, 1248
AatII	GACGTC	1 cut(s)	813
AciI	CCGC	2 cut(s)	270, 998
AclWI	GGATC	2 cut(s)	196, 852
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	6 cut(s)	287, 449, 751, 877, 974, 1276
AfiI	CCNNNNNNNGG	3 cut(s)	546, 604, 949
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	9 cut(s)	10, 49, 418, 523, 637, 645, 922, 1093, 1225
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	4 cut(s)	529, 561, 1140, 1172
Alw21I	GWGCWC	2 cut(s)	222, 1058
Alw26I	GTCTC	1 cut(s)	1234
AlwI	GGATC	2 cut(s)	196, 852
AlwNI	CAGNNNCTG	1 cut(s)	1021
Ama87I	CYCGRG	1 cut(s)	962
AoxI	GGCC	5 cut(s)	51, 314, 586, 706, 906
ApeKI	GCWGC	4 cut(s)	578, 764, 1001, 1230
ApoI	RAATTY	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	1147, 1179
AspS9I	GGNCC	4 cut(s)	707, 906, 952, 1109
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	1205
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	2 cut(s)	952, 1109
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	222, 1058
BbvI	GCAGC	4 cut(s)	565, 776, 988, 1242
BccI	CCATC	3 cut(s)	356, 698, 943
BceAI	ACGGC	1 cut(s)	858
BcgI	CGANNNNNNTGC	2 cut(s)	1247, 1281
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	1282
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	1234
BfaI	CTAG	6 cut(s)	17, 656, 695, 896, 1041, 1272
BfmI	CTRYAG	2 cut(s)	699, 814
BfuI	GTATCC	1 cut(s)	1282
BglI	GCCNNNNNGGC	1 cut(s)	714
BisI	GCNGC	5 cut(s)	579, 765, 999, 1002, 1231
BlsI	GCNGC	5 cut(s)	580, 766, 1000, 1003, 1232
BmcAI	AGTACT	2 cut(s)	974, 1276
Bme1390I	CCNGG	2 cut(s)	318, 710
Bme18I	GGWCC	2 cut(s)	952, 1109
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	4 cut(s)	707, 906, 952, 1109
BmiI	GGNNCC	2 cut(s)	538, 1111
BmrFI	CCNGG	2 cut(s)	318, 710
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	1273
BmuI	ACTGGG	1 cut(s)	76
BoxI	GACNNNNGTC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	2 cut(s)	311, 1022
BpuMI	CCSGG	1 cut(s)	710
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	545, 861
BsaWI	WCCGGW	1 cut(s)	1236
Bsc4I	CCNNNNNNNGG	3 cut(s)	546, 604, 949
Bse1I	ACTGG	3 cut(s)	82, 617, 1321
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	545, 861
BseGI	GGATG	4 cut(s)	89, 136, 367, 871
BseLI	CCNNNNNNNGG	3 cut(s)	546, 604, 949
BseMII	CTCAG	3 cut(s)	152, 604, 1013
BseNI	ACTGG	3 cut(s)	82, 617, 1321
BseXI	GCAGC	4 cut(s)	565, 776, 988, 1242
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	5 cut(s)	53, 316, 588, 708, 908
BsiHKAI	GWGCWC	2 cut(s)	222, 1058
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	2 cut(s)	710, 1237
BslI	CCNNNNNNNGG	3 cut(s)	546, 604, 949
BsmAI	GTCTC	1 cut(s)	1234
BsmBI	CGTCTC	1 cut(s)	1234
BsnI	GGCC	5 cut(s)	53, 316, 588, 708, 908
BsoBI	CYCGRG	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	222, 1058
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	99, 188, 228, 857
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	2 cut(s)	270, 998
BspANI	GGCC	5 cut(s)	53, 316, 588, 708, 908
BspCNI	CTCAG	3 cut(s)	153, 603, 1014
BspHI	TCATGA	1 cut(s)	1165
BspLI	GGNNCC	2 cut(s)	538, 1111
BspPI	GGATC	2 cut(s)	196, 852
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	82, 617, 1321
BssECI	CCNNGG	2 cut(s)	545, 861
BssMI	GATC	4 cut(s)	99, 188, 228, 857
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	2 cut(s)	545, 861
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	5 cut(s)	157, 662, 944, 1060, 1279
BstACI	GRCGYC	1 cut(s)	810
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	368, 390
BstDEI	CTNAG	7 cut(s)	161, 246, 311, 505, 590, 1022, 1072
BstDSI	CCRYGG	1 cut(s)	861
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	4 cut(s)	89, 136, 367, 871
BstKTI	GATC	4 cut(s)	102, 191, 231, 860
BstMAI	GTCTC	1 cut(s)	1234
BstMBI	GATC	4 cut(s)	99, 188, 228, 857
BstMWI	GCNNNNNNNGC	5 cut(s)	418, 575, 714, 995, 1007
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	731, 743
BstPAI	GACNNNNGTC	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	316, 708
BstSFI	CTRYAG	2 cut(s)	699, 814
BstV1I	GCAGC	4 cut(s)	565, 776, 988, 1242
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuI	GTATCC	1 cut(s)	1282
BsuRI	GGCC	5 cut(s)	53, 316, 588, 708, 908
BtgI	CCRYGG	1 cut(s)	861
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	4 cut(s)	89, 136, 367, 871
BtsIMutI	CAGTG	3 cut(s)	153, 1022, 1056
Cac8I	GCNNGC	2 cut(s)	368, 390
CaiI	CAGNNNCTG	1 cut(s)	1021
CciI	TCATGA	1 cut(s)	1165
Cfr13I	GGNCC	4 cut(s)	707, 906, 952, 1109
Csp6I	GTAC	6 cut(s)	286, 448, 750, 876, 973, 1275
CviAII	CATG	8 cut(s)	490, 602, 728, 740, 745, 755, 862, 1166
CviQI	GTAC	6 cut(s)	286, 448, 750, 876, 973, 1275
DdeI	CTNAG	7 cut(s)	161, 246, 311, 505, 590, 1022, 1072
DpnI	GATC	4 cut(s)	101, 190, 230, 859
DpnII	GATC	4 cut(s)	99, 188, 228, 857
DrdI	GACNNNNNNGTC	2 cut(s)	966, 1248
DseDI	GACNNNNNNGTC	2 cut(s)	966, 1248
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	545, 861
Eco147I	AGGCCT	2 cut(s)	316, 588
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	952, 1109
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	962
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	545, 861
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	545, 861
Esp3I	CGTCTC	1 cut(s)	1234
FaeI	CATG	8 cut(s)	493, 605, 731, 743, 748, 758, 865, 1169
FatI	CATG	8 cut(s)	489, 601, 727, 739, 744, 754, 861, 1165
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	5 cut(s)	579, 765, 999, 1002, 1231
FokI	GGATG	4 cut(s)	76, 143, 374, 878
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	579, 765, 999, 1002, 1231
FspBI	CTAG	6 cut(s)	17, 656, 695, 896, 1041, 1272
GluI	GCNGC	5 cut(s)	579, 765, 999, 1002, 1231
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	5 cut(s)	53, 316, 588, 708, 908
HapII	CCGG	2 cut(s)	710, 1237
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	8 cut(s)	493, 605, 731, 743, 748, 758, 865, 1169
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	2 cut(s)	238, 308
HinfI	GANTC	4 cut(s)	558, 926, 960, 1136
HpaII	CCGG	2 cut(s)	710, 1237
HphI	GGTGA	1 cut(s)	1205
Hpy166II	GTNNAC	3 cut(s)	286, 436, 552
Hpy188I	TCNGA	7 cut(s)	70, 130, 188, 685, 1254, 1288, 1313
Hpy188III	TCNNGA	9 cut(s)	160, 277, 534, 770, 781, 1041, 1066, 1140, 1166
Hpy8I	GTNNAC	3 cut(s)	286, 436, 552
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	7 cut(s)	260, 707, 916, 977, 1142, 1203, 1219
HpyCH4III	ACNGT	5 cut(s)	157, 662, 944, 1060, 1279
HpyCH4IV	ACGT	2 cut(s)	112, 810
HpyCH4V	TGCA	3 cut(s)	153, 764, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	418, 575, 714, 995, 1007
HpyF3I	CTNAG	7 cut(s)	161, 246, 311, 505, 590, 1022, 1072
HpySE526I	ACGT	2 cut(s)	112, 810
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	8 cut(s)	493, 605, 731, 743, 748, 758, 865, 1169
Kzo9I	GATC	4 cut(s)	99, 188, 228, 857
LmnI	GCTCC	2 cut(s)	575, 772
Lsp1109I	GCAGC	4 cut(s)	565, 776, 988, 1242
LweI	GCATC	1 cut(s)	1273
MaeI	CTAG	6 cut(s)	17, 656, 695, 896, 1041, 1272
MaeII	ACGT	2 cut(s)	112, 810
MaeIII	GTNAC	3 cut(s)	120, 164, 730
MalI	GATC	4 cut(s)	101, 190, 230, 859
MboI	GATC	4 cut(s)	99, 188, 228, 857
MboII	GAAGA	5 cut(s)	22, 188, 470, 620, 867
MfeI	CAATTG	3 cut(s)	413, 570, 1104
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	222, 1058
MluCI	AATT	7 cut(s)	139, 175, 413, 570, 1104, 1155, 1220
MlyI	GAGTC	3 cut(s)	567, 920, 954
MmeI	TCCRAC	2 cut(s)	1154, 1194
MnlI	CCTC	8 cut(s)	491, 598, 599, 608, 958, 1089, 1198, 1248
MseI	TTAA	2 cut(s)	345, 794
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	2 cut(s)	710, 1237
MspR9I	CCNGG	2 cut(s)	318, 710
MunI	CAATTG	3 cut(s)	413, 570, 1104
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	5 cut(s)	418, 575, 714, 995, 1007
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	4 cut(s)	99, 188, 228, 857
NlaIII	CATG	8 cut(s)	493, 605, 731, 743, 748, 758, 865, 1169
NlaIV	GGNNCC	2 cut(s)	538, 1111
NmuCI	GTSAC	3 cut(s)	120, 164, 730
NspI	RCATGY	2 cut(s)	731, 743
PaeR7I	CTCGAG	1 cut(s)	962
PagI	TCATGA	1 cut(s)	1165
PceI	AGGCCT	2 cut(s)	316, 588
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	1136
PkrI	GCNGC	5 cut(s)	580, 766, 1000, 1003, 1232
PleI	GAGTC	3 cut(s)	566, 920, 954
PpsI	GAGTC	3 cut(s)	566, 920, 954
Ppu21I	YACGTR	1 cut(s)	113
PscI	ACATGT	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	557
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	538, 1111
PspPI	GGNCC	4 cut(s)	707, 906, 952, 1109
PspXI	VCTCGAGB	1 cut(s)	962
PstNI	CAGNNNCTG	1 cut(s)	1021
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	6 cut(s)	287, 449, 751, 877, 974, 1276
RsaNI	GTAC	6 cut(s)	286, 448, 750, 876, 973, 1275
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	345, 794
SatI	GCNGC	5 cut(s)	579, 765, 999, 1002, 1231
Sau3AI	GATC	4 cut(s)	99, 188, 228, 857
Sau96I	GGNCC	4 cut(s)	707, 906, 952, 1109
ScaI	AGTACT	2 cut(s)	974, 1276
SchI	GAGTC	3 cut(s)	567, 920, 954
ScrFI	CCNGG	2 cut(s)	318, 710
SduI	GDGCHC	2 cut(s)	222, 1058
SfaNI	GCATC	1 cut(s)	1273
SfcI	CTRYAG	2 cut(s)	699, 814
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	2 cut(s)	952, 1109
SlaI	CTCGAG	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	7 cut(s)	139, 175, 413, 570, 1104, 1155, 1220
SseBI	AGGCCT	2 cut(s)	316, 588
SsiI	CCGC	2 cut(s)	270, 998
SspMI	CTAG	6 cut(s)	17, 656, 695, 896, 1041, 1272
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	2 cut(s)	316, 588
StyD4I	CCNGG	2 cut(s)	316, 708
StyI	CCWWGG	2 cut(s)	545, 861
TaaI	ACNGT	5 cut(s)	157, 662, 944, 1060, 1279
TaiI	ACGT	2 cut(s)	115, 813
TaqI	TCGA	2 cut(s)	222, 963
TaqII	GACCGA	2 cut(s)	680, 1257
TasI	AATT	7 cut(s)	139, 175, 413, 570, 1104, 1155, 1220
TatI	WGTACW	3 cut(s)	285, 972, 1274
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	1 cut(s)	1136
Tru1I	TTAA	2 cut(s)	345, 794
Tru9I	TTAA	2 cut(s)	345, 794
TscAI	CASTG	3 cut(s)	160, 1022, 1063
TseFI	GTSAC	3 cut(s)	120, 164, 730
TseI	GCWGC	4 cut(s)	578, 764, 1001, 1230
Tsp45I	GTSAC	3 cut(s)	120, 164, 730
TspDTI	ATGAA	6 cut(s)	132, 188, 477, 498, 735, 1100
TspRI	CASTG	3 cut(s)	160, 1022, 1063
VpaK11BI	GGWCC	2 cut(s)	952, 1109
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	175
XbaI	TCTAGA	1 cut(s)	1040
XceI	RCATGY	2 cut(s)	731, 743
XhoI	CTCGAG	1 cut(s)	962
XspI	CTAG	6 cut(s)	17, 656, 695, 896, 1041, 1272
ZraI	GACGTC	1 cut(s)	811
ZrmI	AGTACT	2 cut(s)	974, 1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.