FvH4_6g39680

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005236
Physical Location & Seq
Reverse (-)
31304957 .. 31305839
883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39680.t1

Sequence Viewer

Length: 219 bp
ATGAGTTCAAGCACAAACTCCGCTTCAGCTTACACCGCTCCGGCGTCGCAACAGGGACCTTACGTCCAGGCTCCGCCTCCCGCCGGCTATCCCACCATGAGAGCCGGCGACTCCGACTTGCCCCAGAGTCGTGTGGAGACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGTGTTGCTGTTGTATGCTCGATGCTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

73

Amino Acids

7.48

Weight (kDa)

5.94

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 21 - 72 2.2e-11 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 4 cut(s) 21, 36, 74, 81
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 9
AhdI GACNNNNNGTC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 171, 179
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 158, 166
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 2 cut(s) 172, 180
BlsI GCNGC 2 cut(s) 173, 181
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 57, 72
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 158, 166
BsiSI CCGG 3 cut(s) 41, 84, 105
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 131
BspACI CCGC 4 cut(s) 21, 36, 74, 81
BspLI GGNNCC 2 cut(s) 57, 72
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 38
BsrFI RCCGGY 2 cut(s) 83, 104
BssAI RCCGGY 2 cut(s) 83, 104
BssECI CCNNGG 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 85, 106, 211
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 158, 166
Cac8I GCNNGC 3 cut(s) 85, 106, 211
Cfr10I RCCGGY 2 cut(s) 83, 104
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 33
CviAII CATG 1 cut(s) 97
CviJI RGCY 6 cut(s) 29, 71, 87, 104, 159, 171
CviKI_1 RGCY 6 cut(s) 29, 71, 87, 104, 159, 171
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 200
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 172, 180
Fsp4HI GCNGC 2 cut(s) 172, 180
GluI GCNGC 2 cut(s) 172, 180
HapII CCGG 3 cut(s) 41, 84, 105
HgaI GACGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 110, 127
HpaII CCGG 3 cut(s) 41, 84, 105
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 115, 218
Hpy188III TCNNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 100
KroI GCCGGC 2 cut(s) 83, 104
KroNI GCCGGC 2 cut(s) 85, 106
LmnI GCTCC 2 cut(s) 43, 76
LpnPI CCDG 8 cut(s) 38, 53, 54, 80, 97, 118, 137, 148
Lsp1109I GCAGC 2 cut(s) 158, 166
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 104, 136
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 87
MroNI GCCGGC 2 cut(s) 83, 104
MspI CCGG 3 cut(s) 41, 84, 105
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 35
NaeI GCCGGC 2 cut(s) 85, 106
NgoMIV GCCGGC 2 cut(s) 83, 104
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 57, 72
PdiI GCCGGC 2 cut(s) 85, 106
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 173, 181
PleI GAGTC 2 cut(s) 104, 135
PpsI GAGTC 2 cut(s) 104, 135
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 57, 72
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 142
SatI GCNGC 2 cut(s) 172, 180
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 104, 136
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 31, 61, 66
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 56
SsiI CCGC 4 cut(s) 21, 36, 74, 81
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 204
TseI GCWGC 2 cut(s) 171, 179
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.