Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

41197770 .. 41214557

Gene Structure 16788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATCGGAGCTTCGACAACGTCGCGGTAAGCGATGATGATGACGATGCGGAAGGATTCTGGATCGGGTTGACGTGGAGATCTACATGGCGCTCTACATCGCCTCGCCGCGATGCTGTTGTCGATGCGTTCGAGTTGCCGCAGGAGACGATCGTTGCCGGGGATAAGATGGCACCGAGTTTGGCGCTGGCGAAAATGGCCAAGTCAAAGAATCACACCGCTCAAAACCAGTCCCTGCGCAGTGAACGAAGTAGACATGCCCAGGTTCATCAAGAAATTTCTCCAATTGTTTTGACGGTCATGTCTTGCTTAGTCCCCATACTGCAGCATCCAGAGGCACTCAACAAGTCACTAATTGAGAACAGTGCTATCACGCTTGGGAGGCTTGCATGTGTTTGTCCCGAGCTTGTGGCTCCGCATATGGAGCATTTCATGCAGCCATGGTGCAACGTTTTGTCAATGTTTCCAATGGGTAGTGATGTCGATCTGACGATCTGTGCTGGAGGTGGGCATGCGCAGAGTGGTGGGCTGATTCCCATATCTGTTTGCGGCGACTTCTGTGGTGGCAATTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

192

Amino Acids

20.84

Weight (kDa)

5.24

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
Acc16I	TGCGCA	2 cut(s)	239, 516
AccB1I	GGYRCC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	2 cut(s)	26, 111
AciI	CCGC	7 cut(s)	26, 50, 109, 140, 219, 416, 549
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	2 cut(s)	12, 71
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	276
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	2 cut(s)	12, 406
AluI	AGCT	2 cut(s)	12, 406
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	12, 71
AlwNI	CAGNNNCTG	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	325, 436
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	4 cut(s)	93, 187, 240, 517
AsuC2I	CCSGG	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	337, 448
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	2 cut(s)	94, 188
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	5 cut(s)	109, 140, 326, 437, 550
BlsI	GCNGC	5 cut(s)	110, 141, 327, 438, 551
Bme1390I	CCNGG	2 cut(s)	160, 263
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	174, 414
BmrFI	CCNGG	2 cut(s)	160, 263
BmsI	GCATC	4 cut(s)	37, 103, 115, 337
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	159, 261, 440
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	159, 261, 440
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	337, 448
Bsh1236I	CGCG	2 cut(s)	26, 111
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	3 cut(s)	217, 299, 384
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	3 cut(s)	217, 299, 384
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	401
Bsp143I	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	7 cut(s)	26, 50, 109, 140, 219, 416, 549
BspANI	GGCC	1 cut(s)	200
BspFNI	CGCG	2 cut(s)	26, 111
BspLI	GGNNCC	2 cut(s)	174, 414
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	12, 71
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	159, 261, 440
BssMI	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	298, 365
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	189, 387, 513
BstDEI	CTNAG	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	26, 111
BstH2I	RGCGCY	2 cut(s)	94, 188
BstHHI	GCGC	4 cut(s)	93, 187, 240, 517
BstKTI	GATC	6 cut(s)	7, 66, 83, 153, 487, 495
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 382, 424, 433
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	3 cut(s)	260, 393, 515
BstSCI	CCNGG	2 cut(s)	158, 261
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	2 cut(s)	26, 111
BstV1I	GCAGC	2 cut(s)	337, 448
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	440
BtgZI	GCGATG	3 cut(s)	48, 84, 126
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 370
Cac8I	GCNNGC	3 cut(s)	189, 387, 513
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	4 cut(s)	93, 187, 240, 517
CviAII	CATG	7 cut(s)	87, 257, 301, 390, 433, 441, 512
CviJI	RGCY	7 cut(s)	12, 200, 385, 406, 413, 439, 529
CviKI_1	RGCY	7 cut(s)	12, 200, 385, 406, 413, 439, 529
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	6 cut(s)	6, 65, 82, 152, 486, 494
DpnII	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	7 cut(s)	90, 260, 304, 393, 436, 444, 515
FaqI	GGGAC	3 cut(s)	217, 299, 384
FatI	CATG	7 cut(s)	86, 256, 300, 389, 432, 440, 511
FauNDI	CATATG	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	109, 140, 326, 437, 550
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	5 cut(s)	109, 140, 326, 437, 550
FspI	TGCGCA	2 cut(s)	239, 516
GlaI	GCGC	4 cut(s)	92, 186, 239, 516
GluI	GCNGC	5 cut(s)	109, 140, 326, 437, 550
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	2 cut(s)	94, 188
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	4 cut(s)	93, 187, 240, 517
Hin1II	CATG	7 cut(s)	90, 260, 304, 393, 436, 444, 515
Hin6I	GCGC	4 cut(s)	91, 185, 238, 515
HinP1I	GCGC	4 cut(s)	91, 185, 238, 515
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	57, 211, 532
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	3 cut(s)	72, 245, 254
Hpy188I	TCNGA	2 cut(s)	9, 489
Hpy188III	TCNNGA	4 cut(s)	61, 272, 332, 401
Hpy8I	GTNNAC	3 cut(s)	72, 245, 254
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	298, 365
HpyCH4IV	ACGT	3 cut(s)	21, 74, 450
HpyCH4V	TGCA	4 cut(s)	325, 389, 436, 447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 382, 424, 433
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	3 cut(s)	21, 74, 450
Hsp92II	CATG	7 cut(s)	90, 260, 304, 393, 436, 444, 515
HspAI	GCGC	4 cut(s)	91, 185, 238, 515
Kzo9I	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
LmnI	GCTCC	3 cut(s)	9, 418, 424
Lsp1109I	GCAGC	2 cut(s)	337, 448
LweI	GCATC	4 cut(s)	37, 103, 115, 337
MaeII	ACGT	3 cut(s)	21, 74, 450
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	6 cut(s)	6, 65, 82, 152, 486, 494
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	276, 285, 354, 568
MluNI	TGGCCA	1 cut(s)	200
MnlI	CCTC	4 cut(s)	114, 328, 375, 497
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	160, 263
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	2 cut(s)	26, 111
MwoI	GCNNNNNNNGC	4 cut(s)	197, 382, 424, 433
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
NlaIII	CATG	7 cut(s)	90, 260, 304, 393, 436, 444, 515
NlaIV	GGNNCC	2 cut(s)	174, 414
NmuCI	GTSAC	1 cut(s)	348
NsbI	TGCGCA	2 cut(s)	239, 516
NspI	RCATGY	3 cut(s)	260, 393, 515
PaeI	GCATGC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 129
PfeI	GAWTC	3 cut(s)	57, 211, 532
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	5 cut(s)	110, 141, 327, 438, 551
Ple19I	CGATCG	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	174, 414
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	153
SatI	GCNGC	5 cut(s)	109, 140, 326, 437, 550
Sau3AI	GATC	6 cut(s)	4, 63, 80, 150, 484, 492
ScrFI	CCNGG	2 cut(s)	160, 263
SetI	ASST	7 cut(s)	14, 24, 77, 267, 408, 453, 508
SfaNI	GCATC	4 cut(s)	37, 103, 115, 337
SfcI	CTRYAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	4 cut(s)	276, 285, 354, 568
SsiI	CCGC	7 cut(s)	26, 50, 109, 140, 219, 416, 549
StyD4I	CCNGG	2 cut(s)	158, 261
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	298, 365
TaiI	ACGT	3 cut(s)	24, 77, 453
TaqI	TCGA	4 cut(s)	15, 123, 132, 483
TasI	AATT	4 cut(s)	276, 285, 354, 568
TauI	GCSGC	3 cut(s)	111, 142, 552
TfiI	GAWTC	3 cut(s)	57, 211, 532
TscAI	CASTG	2 cut(s)	247, 370
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	2 cut(s)	325, 436
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	257, 421
TspRI	CASTG	2 cut(s)	247, 370
Tth111I	GACNNNGTC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	3 cut(s)	260, 393, 515
XmiI	GTMKAC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.