Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

16149957 .. 16160953

Gene Structure 10997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTTCAAGTGCTAACTCCGCAGCAGCGTACCCCGCTCCGGCTTCCCAACAGGGACGTTACGTCCAGGCGCCACCTCCTGCCGGCTATCCCACCATGACAGACGATCAGTTGCCCCAGAGCCGCGGTCCAGTCGAGACCAAGTCCAAGGGAGATGGATTCTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTGTATCAAACACGCACATCTCTACCCGATCAACTATTTTCGGACAGCATATCATCTTATCATCATGAGTTCTAGCACTAGTTCCGCAGCAGGGTACACCGCTCCGGCTTCGCAACAGGGACCTTACGTCCAGGCTCCGCCTCCTGCCGGCTATCCCACCGTGAGAGAGGACTCCAACTTGCCCCAGAATCATGGTCGTGTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGTGTTGCTGTTGTATGCTCGATGCTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

159

Amino Acids

16.87

Weight (kDa)

8.21

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYSTM	PF12734	25 - 67	9.1e-08	Cysteine-rich TM module stress tolerance
CYSTM	PF12734	111 - 159	1.1e-10	Cysteine-rich TM module stress tolerance

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	2 cut(s)	38, 296
AccII	CGCG	1 cut(s)	126
AciI	CCGC	7 cut(s)	21, 36, 124, 126, 279, 294, 332
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	32, 290
AfiI	CCNNNNNNNGG	4 cut(s)	40, 83, 285, 341
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	2 cut(s)	62, 320
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	66, 324
Alw26I	GTCTC	1 cut(s)	131
ApeKI	GCWGC	6 cut(s)	23, 26, 179, 281, 432, 440
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	128, 314
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	128, 314
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	6 cut(s)	35, 38, 166, 293, 419, 427
BccI	CCATC	2 cut(s)	149, 410
BciT130I	CCWGG	2 cut(s)	68, 326
BcoDI	GTCTC	1 cut(s)	131
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	267, 273
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	7 cut(s)	24, 27, 124, 180, 282, 433, 441
BlsI	GCNGC	7 cut(s)	25, 28, 125, 181, 283, 434, 442
Bme1390I	CCNGG	2 cut(s)	68, 326
Bme18I	GGWCC	2 cut(s)	128, 314
BmeRI	GACNNNNNGTC	2 cut(s)	62, 320
BmgT120I	GGNCC	2 cut(s)	128, 314
BmiI	GGNNCC	3 cut(s)	72, 315, 330
BmrFI	CCNGG	2 cut(s)	68, 326
BmsI	GCATC	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	124, 147, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 83, 285, 341
Bse118I	RCCGGY	2 cut(s)	83, 341
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	68, 326
BseDI	CCNNGG	3 cut(s)	124, 147, 408
BseLI	CCNNNNNNNGG	4 cut(s)	40, 83, 285, 341
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	6 cut(s)	35, 38, 166, 293, 419, 427
Bsh1236I	CGCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	70
BsiSI	CCGG	4 cut(s)	41, 84, 299, 342
BslFI	GGGAC	2 cut(s)	69, 327
BslI	CCNNNNNNNGG	4 cut(s)	40, 83, 285, 341
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	69, 327
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	106, 222
BspACI	CCGC	7 cut(s)	21, 36, 124, 126, 279, 294, 332
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	72, 315, 330
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	131
BsrBI	CCGCTC	2 cut(s)	38, 296
BsrFI	RCCGGY	2 cut(s)	83, 341
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	2 cut(s)	83, 341
BssECI	CCNNGG	3 cut(s)	124, 147, 408
BssMI	GATC	2 cut(s)	106, 222
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	147, 408
Bst2UI	CCWGG	2 cut(s)	68, 326
Bst4CI	ACNGT	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	85, 343, 472
BstDSI	CCRYGG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	109, 225
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	106, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 35
BstNI	CCWGG	2 cut(s)	68, 326
BstSCI	CCNGG	2 cut(s)	66, 324
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	6 cut(s)	35, 38, 166, 293, 419, 427
BstXI	CCANNNNNNTGG	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	85, 343, 472
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	83, 341
Cfr13I	GGNCC	2 cut(s)	128, 314
Cfr42I	CCGCGG	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	31, 289
CviAII	CATG	3 cut(s)	97, 259, 386
CviJI	RGCY	8 cut(s)	44, 87, 123, 302, 329, 345, 420, 432
CviKI_1	RGCY	8 cut(s)	44, 87, 123, 302, 329, 345, 420, 432
CviQI	GTAC	2 cut(s)	31, 289
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	2 cut(s)	108, 224
DpnII	GATC	2 cut(s)	106, 222
DriI	GACNNNNNGTC	2 cut(s)	62, 320
Eam1105I	GACNNNNNGTC	2 cut(s)	62, 320
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	147, 408
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	128, 314
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	66, 324
EcoT14I	CCWWGG	2 cut(s)	147, 408
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	147, 408
FaeI	CATG	3 cut(s)	100, 262, 389
FaiI	YATR	5 cut(s)	98, 244, 260, 387, 461
FaqI	GGGAC	2 cut(s)	69, 327
FatI	CATG	3 cut(s)	96, 258, 385
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	7 cut(s)	24, 27, 124, 180, 282, 433, 441
Fsp4HI	GCNGC	7 cut(s)	24, 27, 124, 180, 282, 433, 441
FspBI	CTAG	2 cut(s)	267, 273
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	7 cut(s)	24, 27, 124, 180, 282, 433, 441
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	4 cut(s)	41, 84, 299, 342
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	100, 262, 389
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	159, 365, 382
HpaII	CCGG	4 cut(s)	41, 84, 299, 342
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	4 cut(s)	136, 163, 259, 424
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	160, 421
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	58, 63, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 35
HpySE526I	ACGT	3 cut(s)	58, 63, 321
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	100, 262, 389
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	2 cut(s)	83, 341
KroNI	GCCGGC	2 cut(s)	85, 343
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	106, 222
LmnI	GCTCC	3 cut(s)	43, 301, 334
Lsp1109I	GCAGC	6 cut(s)	35, 38, 166, 293, 419, 427
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	267, 273
MaeII	ACGT	3 cut(s)	58, 63, 321
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	108, 224
MbiI	CCGCTC	2 cut(s)	38, 296
MboI	GATC	2 cut(s)	106, 222
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	87, 345, 355
MroNI	GCCGGC	2 cut(s)	83, 341
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	4 cut(s)	41, 84, 299, 342
MspR9I	CCNGG	2 cut(s)	68, 326
MvaI	CCWGG	2 cut(s)	68, 326
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	20, 35
NaeI	GCCGGC	2 cut(s)	85, 343
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	2 cut(s)	106, 222
NgoMIV	GCCGGC	2 cut(s)	83, 341
NlaIII	CATG	3 cut(s)	100, 262, 389
NlaIV	GGNNCC	3 cut(s)	72, 315, 330
PagI	TCATGA	1 cut(s)	258
PdiI	GCCGGC	2 cut(s)	85, 343
PfeI	GAWTC	2 cut(s)	159, 382
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	7 cut(s)	25, 28, 125, 181, 283, 434, 442
PleI	GAGTC	1 cut(s)	359
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	66, 324
PspGI	CCWGG	2 cut(s)	66, 324
PspN4I	GGNNCC	3 cut(s)	72, 315, 330
PspPI	GGNCC	2 cut(s)	128, 314
PspPPI	RGGWCCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	32, 290
RsaNI	GTAC	2 cut(s)	31, 289
RseI	CAYNNNNRTG	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	127
SatI	GCNGC	7 cut(s)	24, 27, 124, 180, 282, 433, 441
Sau3AI	GATC	2 cut(s)	106, 222
Sau96I	GGNCC	2 cut(s)	128, 314
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	68, 326
SetI	ASST	5 cut(s)	61, 66, 79, 319, 324
SfaNI	GCATC	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	128, 314
SmiMI	CAYNNNNRTG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	272
SsiI	CCGC	7 cut(s)	21, 36, 124, 126, 279, 294, 332
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	267, 273
StyD4I	CCNGG	2 cut(s)	66, 324
StyI	CCWWGG	2 cut(s)	147, 408
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	61, 66, 324
TaqI	TCGA	2 cut(s)	135, 465
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	159, 382
TseI	GCWGC	6 cut(s)	23, 26, 179, 281, 432, 440
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	128, 314
XspI	CTAG	2 cut(s)	267, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.