Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Forward (+)

5947341 .. 5947878

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGATCGGAGCTCCGACGACGTCGCGGCAAGTGGTGATGATGACGATGCGAAAGGATTCTGGATCAGGTTGACGCGGAGATCTACATGGCGCTCTACATCGCCTCGCCGCGATGCTGTTGTCGATGCGTTCGAGTTGCCGCAGGAGACGATCACTGCCAGGGACGAGGTGGCACCGAGTTCGGCGCCGGCGAAAATGGCAAGTCAAAGAATCACACCGCTTAGAACTAGCTGCTGCGCGGTGAACGAAGCAGACATGCCCAGGTTGAGACTGAGAGGAGACTTAACAGCCATGGCTGATTTTGTTCCTACACGTCTTTTGAATTCGATTCTTCAGATTTTGTGCCTTATAGAGGGAATTGTGTCTCCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.68

Weight (kDa)

5.0

Isoelectric Point (pI)

72.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	2 cut(s)	172, 184
AccII	CGCG	4 cut(s)	26, 76, 111, 239
AciI	CCGC	6 cut(s)	26, 76, 109, 140, 218, 239
AclWI	GGATC	2 cut(s)	12, 71
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	21, 185
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	158, 260
AluBI	AGCT	2 cut(s)	12, 231
AluI	AGCT	2 cut(s)	12, 231
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	4 cut(s)	140, 262, 273, 369
AlwI	GGATC	2 cut(s)	12, 71
ApeKI	GCWGC	2 cut(s)	231, 234
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	3 cut(s)	93, 187, 239
AsuHPI	GGTGA	2 cut(s)	47, 253
BanI	GGYRCC	2 cut(s)	172, 184
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	218, 221
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	2 cut(s)	160, 262
BcoDI	GTCTC	4 cut(s)	140, 262, 273, 369
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	94, 188
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	5 cut(s)	27, 109, 140, 232, 235
BlsI	GCNGC	5 cut(s)	28, 110, 141, 233, 236
Bme1390I	CCNGG	2 cut(s)	160, 262
BmgBI	CACGTC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	174, 186
BmrFI	CCNGG	2 cut(s)	160, 262
BmsI	GCATC	3 cut(s)	37, 103, 115
BsaHI	GRCGYC	2 cut(s)	21, 185
BsaJI	CCNNGG	3 cut(s)	159, 260, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	160, 262
BseDI	CCNNGG	3 cut(s)	159, 260, 291
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	263, 360
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	218, 221
Bsh1236I	CGCG	4 cut(s)	26, 76, 111, 239
BshNI	GGYRCC	2 cut(s)	172, 184
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	4 cut(s)	140, 262, 273, 369
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	4, 63, 80, 150
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	6 cut(s)	26, 76, 109, 140, 218, 239
BspCNI	CTCAG	2 cut(s)	264, 361
BspFNI	CGCG	4 cut(s)	26, 76, 111, 239
BspLI	GGNNCC	2 cut(s)	174, 186
BspPI	GGATC	2 cut(s)	12, 71
BspT107I	GGYRCC	2 cut(s)	172, 184
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	159, 260, 291
BssMI	GATC	4 cut(s)	4, 63, 80, 150
BssNI	GRCGYC	2 cut(s)	21, 185
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	160, 262
BstACI	GRCGYC	2 cut(s)	21, 185
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	221, 272, 369
BstDSI	CCRYGG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstFNI	CGCG	4 cut(s)	26, 76, 111, 239
BstH2I	RGCGCY	2 cut(s)	94, 188
BstHHI	GCGC	3 cut(s)	93, 187, 239
BstKTI	GATC	4 cut(s)	7, 66, 83, 153
BstMAI	GTCTC	4 cut(s)	140, 262, 273, 369
BstMBI	GATC	4 cut(s)	4, 63, 80, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	160, 262
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	158, 260
BstUI	CGCG	4 cut(s)	26, 76, 111, 239
BstV1I	GCAGC	2 cut(s)	218, 221
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	2 cut(s)	84, 126
BtrI	CACGTC	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	3 cut(s)	93, 187, 239
Cfr10I	RCCGGY	1 cut(s)	187
CseI	GACGC	1 cut(s)	82
CviAII	CATG	3 cut(s)	87, 256, 292
CviJI	RGCY	4 cut(s)	12, 231, 290, 296
CviKI_1	RGCY	4 cut(s)	12, 231, 290, 296
DdeI	CTNAG	3 cut(s)	221, 272, 369
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	4 cut(s)	6, 65, 82, 152
DpnII	GATC	4 cut(s)	4, 63, 80, 150
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	158, 260
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	14
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	90, 259, 295
FaiI	YATR	4 cut(s)	88, 257, 293, 350
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	86, 255, 291
Fnu4HI	GCNGC	5 cut(s)	27, 109, 140, 232, 235
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	5 cut(s)	27, 109, 140, 232, 235
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	3 cut(s)	92, 186, 238
GluI	GCNGC	5 cut(s)	27, 109, 140, 232, 235
HaeII	RGCGCY	2 cut(s)	94, 188
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	3 cut(s)	93, 187, 239
Hin1I	GRCGYC	2 cut(s)	21, 185
Hin1II	CATG	3 cut(s)	90, 259, 295
Hin6I	GCGC	3 cut(s)	91, 185, 237
HinP1I	GCGC	3 cut(s)	91, 185, 237
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	57, 210, 328
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	47, 253
Hpy166II	GTNNAC	2 cut(s)	72, 244
Hpy188I	TCNGA	3 cut(s)	9, 16, 336
Hpy188III	TCNNGA	2 cut(s)	61, 368
Hpy8I	GTNNAC	2 cut(s)	72, 244
Hpy99I	CGWCG	3 cut(s)	20, 23, 26
HpyCH4IV	ACGT	2 cut(s)	21, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	221, 272, 369
HpySE526I	ACGT	2 cut(s)	21, 313
Hsp92I	GRCGYC	2 cut(s)	21, 185
Hsp92II	CATG	3 cut(s)	90, 259, 295
HspAI	GCGC	3 cut(s)	91, 185, 237
KasI	GGCGCC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	4, 63, 80, 150
LmnI	GCTCC	2 cut(s)	9, 17
LpnPI	CCDG	8 cut(s)	46, 52, 128, 145, 172, 201, 247, 274
Lsp1109I	GCAGC	2 cut(s)	218, 221
LweI	GCATC	3 cut(s)	37, 103, 115
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	21, 313
MalI	GATC	4 cut(s)	6, 65, 82, 152
MboI	GATC	4 cut(s)	4, 63, 80, 150
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	322, 357
Mly113I	GGCGCC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	114, 160, 269, 346
MreI	CGCCGGCG	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	284
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	160, 262
MvaI	CCWGG	2 cut(s)	160, 262
MvnI	CGCG	4 cut(s)	26, 76, 111, 239
MwoI	GCNNNNNNNGC	1 cut(s)	197
NaeI	GCCGGC	1 cut(s)	189
NarI	GGCGCC	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	4, 63, 80, 150
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	3 cut(s)	90, 259, 295
NlaIV	GGNNCC	2 cut(s)	174, 186
NspI	RCATGY	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 188
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	57, 210, 328
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	5 cut(s)	28, 110, 141, 233, 236
PluTI	GGCGCC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	158, 260
PspGI	CCWGG	2 cut(s)	158, 260
PspN4I	GGNNCC	2 cut(s)	174, 186
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	5 cut(s)	27, 109, 140, 232, 235
Sau3AI	GATC	4 cut(s)	4, 63, 80, 150
ScrFI	CCNGG	2 cut(s)	160, 262
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	7 cut(s)	14, 24, 71, 171, 233, 266, 316
SfaNI	GCATC	3 cut(s)	37, 103, 115
SfoI	GGCGCC	1 cut(s)	186
SgrAI	CRCCGGYG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	322, 357
SsiI	CCGC	6 cut(s)	26, 76, 109, 140, 218, 239
SspDI	GGCGCC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	158, 260
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	2 cut(s)	24, 316
TaqI	TCGA	3 cut(s)	123, 132, 326
TasI	AATT	2 cut(s)	322, 357
TauI	GCSGC	3 cut(s)	29, 111, 142
TfiI	GAWTC	3 cut(s)	57, 210, 328
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	2 cut(s)	231, 234
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.