Rh4BG111000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005236
Physical Location & Seq
Forward (+)
18739932 .. 18753112
13181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG111000.1

Sequence Viewer

Length: 396 bp
ATGGATCGGAGCTCCGACGACGTCGCGGCAAGCGGTGATGATGACGATGTGGAAGGATTCTGGATCGAGTTGACGCGGAGATCTACATGGTGCTCTACATCGCCTCGCCACGATGCTGTCGTCGATGCGTTCGAGTTGCCGCCAGAGACGATCGCTGCCGGGGACGAGGTGGCACTGAGTTTGGCGCCGGCGAAAATGGCCAAGTTAAAGAATCACACTGCTCAGAACCAGTCTCTGCGCGGTGAACGAAGCAGACATGCCCAGGTTCTATGGAAAATTGGCTTGGCATATATTACCAACTCTATATATTCTCTCGATCCGGTATTCAAAAATCGGAGGTCAAATTCTGTGACACCATCATCCTCCAACTCCTTGGCCCTGTTGACATGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

5.53

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 3 cut(s) 26, 76, 240
AciI CCGC 5 cut(s) 26, 33, 76, 140, 240
AclWI GGATC 3 cut(s) 12, 71, 311
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 2 cut(s) 21, 185
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 261
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 2 cut(s) 14, 95
Alw26I GTCTC 2 cut(s) 140, 237
AlwI GGATC 3 cut(s) 12, 71, 311
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 2 cut(s) 198, 375
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 187, 240
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 47, 254
BalI TGGCCA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 14, 95
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 140, 237
BfoI RGCGCY 1 cut(s) 188
BglII AGATCT 1 cut(s) 80
BisI GCNGC 3 cut(s) 27, 140, 156
BlsI GCNGC 3 cut(s) 28, 141, 157
Bme1390I CCNGG 2 cut(s) 160, 263
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 160, 263
BmsI GCATC 2 cut(s) 103, 115
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 2 cut(s) 21, 185
BsaJI CCNNGG 3 cut(s) 159, 261, 372
BsaWI WCCGGW 1 cut(s) 319
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 3 cut(s) 159, 261, 372
BseGI GGATG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 167, 236
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 3 cut(s) 26, 76, 240
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 200, 377
BshNI GGYRCC 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 14, 95
BsiSI CCGG 3 cut(s) 159, 188, 320
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 140, 237
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 200, 377
Bsp1286I GDGCHC 2 cut(s) 14, 95
Bsp143I GATC 5 cut(s) 4, 63, 80, 150, 316
BspACI CCGC 5 cut(s) 26, 33, 76, 140, 240
BspANI GGCC 2 cut(s) 200, 377
BspCNI CTCAG 2 cut(s) 168, 235
BspFNI CGCG 3 cut(s) 26, 76, 240
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 12, 71, 311
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 159, 261, 372
BssMI GATC 5 cut(s) 4, 63, 80, 150, 316
BssNI GRCGYC 2 cut(s) 21, 185
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 21, 185
BstC8I GCNNGC 2 cut(s) 31, 189
BstDEI CTNAG 2 cut(s) 176, 222
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 3 cut(s) 26, 76, 240
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 187, 240
BstKTI GATC 5 cut(s) 7, 66, 83, 153, 319
BstMAI GTCTC 2 cut(s) 140, 237
BstMBI GATC 5 cut(s) 4, 63, 80, 150, 316
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 260, 390
BstSCI CCNGG 2 cut(s) 158, 261
BstUI CGCG 3 cut(s) 26, 76, 240
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 200, 377
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 173, 216
Cac8I GCNNGC 2 cut(s) 31, 189
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 2 cut(s) 187, 240
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 82
CviAII CATG 3 cut(s) 87, 257, 387
CviJI RGCY 4 cut(s) 12, 200, 282, 377
CviKI_1 RGCY 4 cut(s) 12, 200, 282, 377
DdeI CTNAG 2 cut(s) 176, 222
DinI GGCGCC 1 cut(s) 186
DpnI GATC 5 cut(s) 6, 65, 82, 152, 318
DpnII GATC 5 cut(s) 4, 63, 80, 150, 316
EaeI YGGCCR 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 14
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 3 cut(s) 90, 260, 390
FaiI YATR 8 cut(s) 88, 258, 271, 289, 291, 305, 307, 388
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 86, 256, 386
Fnu4HI GCNGC 3 cut(s) 27, 140, 156
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 27, 140, 156
GlaI GCGC 2 cut(s) 186, 239
GluI GCNGC 3 cut(s) 27, 140, 156
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 200, 377
HapII CCGG 3 cut(s) 159, 188, 320
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 187, 240
Hin1I GRCGYC 2 cut(s) 21, 185
Hin1II CATG 3 cut(s) 90, 260, 390
Hin6I GCGC 2 cut(s) 185, 238
HinP1I GCGC 2 cut(s) 185, 238
HincII GTYRAC 2 cut(s) 72, 384
HindII GTYRAC 2 cut(s) 72, 384
HinfI GANTC 2 cut(s) 57, 211
HpaII CCGG 3 cut(s) 159, 188, 320
HphI GGTGA 2 cut(s) 47, 254
Hpy166II GTNNAC 3 cut(s) 72, 245, 384
Hpy188I TCNGA 4 cut(s) 9, 16, 225, 336
Hpy188III TCNNGA 2 cut(s) 61, 314
Hpy8I GTNNAC 3 cut(s) 72, 245, 384
Hpy99I CGWCG 4 cut(s) 20, 23, 26, 125
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 176, 222
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 2 cut(s) 21, 185
Hsp92II CATG 3 cut(s) 90, 260, 390
HspAI GCGC 2 cut(s) 185, 238
KasI GGCGCC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 5 cut(s) 4, 63, 80, 150, 316
LmnI GCTCC 2 cut(s) 9, 17
LpnPI CCDG 9 cut(s) 46, 156, 172, 201, 242, 248, 275, 333, 392
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 103, 115
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 349
MalI GATC 5 cut(s) 6, 65, 82, 152, 318
MboI GATC 5 cut(s) 4, 63, 80, 150, 316
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 14, 95
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 2 cut(s) 276, 343
MluNI TGGCCA 1 cut(s) 200
Mly113I GGCGCC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 39, 390
MnlI CCTC 4 cut(s) 114, 160, 330, 373
Mox20I TGGCCA 1 cut(s) 200
MreI CGCCGGCG 1 cut(s) 187
MroNI GCCGGC 1 cut(s) 187
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 3 cut(s) 159, 188, 320
MspR9I CCNGG 2 cut(s) 160, 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 3 cut(s) 26, 76, 240
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 189
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 1 cut(s) 160
NdeII GATC 5 cut(s) 4, 63, 80, 150, 316
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 3 cut(s) 90, 260, 390
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 2 cut(s) 260, 390
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 129
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 57, 211
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 28, 141, 157
Ple19I CGATCG 1 cut(s) 153
PluTI GGCGCC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 20
PvuI CGATCG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 3 cut(s) 27, 140, 156
Sau3AI GATC 5 cut(s) 4, 63, 80, 150, 316
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 160, 263
SduI GDGCHC 2 cut(s) 14, 95
SetI ASST 6 cut(s) 14, 24, 171, 267, 341, 395
SfaNI GCATC 2 cut(s) 103, 115
SfoI GGCGCC 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 187
Sse9I AATT 2 cut(s) 276, 343
SsiI CCGC 5 cut(s) 26, 33, 76, 140, 240
SspDI GGCGCC 1 cut(s) 184
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 158, 261
StyI CCWWGG 1 cut(s) 372
TaiI ACGT 1 cut(s) 24
TaqI TCGA 4 cut(s) 66, 123, 132, 315
TasI AATT 2 cut(s) 276, 343
TauI GCSGC 2 cut(s) 29, 142
TfiI GAWTC 2 cut(s) 57, 211
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 180, 223
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 349
TspRI CASTG 2 cut(s) 180, 223
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 1 cut(s) 343
XceI RCATGY 2 cut(s) 260, 390
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.