Rh2DG527700

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005236
Physical Location & Seq
Reverse (-)
75277628 .. 75278209
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG527700.1

Sequence Viewer

Length: 201 bp
ATGAGTTCTAGCACTAGTTCCGCAGCAGTGTACACCGCTCCGGCTTCGCAACAGGGACCTTACGTCCAGGCTCCGCCTCCTGCCGGCTATCCCACCGTGAGAGAGGACTCCAACTTGCCCCAGAATCATGGTCGTGTGGAAACCAAGTCCAAGGGTGACGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGGAGTCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

66

Amino Acids

6.89

Weight (kDa)

6.52

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 3 cut(s) 21, 36, 74
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 83
AhdI GACNNNNNGTC 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 23, 174, 182
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 35, 161, 169
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 9, 15
BisI GCNGC 3 cut(s) 24, 175, 183
BlsI GCNGC 3 cut(s) 25, 176, 184
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 57, 72
BmrFI CCNGG 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 150, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 150, 186
BseLI CCNNNNNNNGG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 35, 161, 169
BsiSI CCGG 2 cut(s) 41, 84
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 30
BspACI CCGC 3 cut(s) 21, 36, 74
BspLI GGNNCC 2 cut(s) 57, 72
BsrBI CCGCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 150, 186
BssT1I CCWWGG 2 cut(s) 150, 186
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 35, 161, 169
BstXI CCANNNNNNTGG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 44, 71, 87, 162, 174
CviKI_1 RGCY 5 cut(s) 44, 71, 87, 162, 174
CviQI GTAC 1 cut(s) 31
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 150, 186
Eco47I GGWCC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 150, 186
ErhI CCWWGG 2 cut(s) 150, 186
FaeI CATG 1 cut(s) 131
FaiI YATR 1 cut(s) 129
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 24, 175, 183
Fsp4HI GCNGC 3 cut(s) 24, 175, 183
FspBI CTAG 2 cut(s) 9, 15
GluI GCNGC 3 cut(s) 24, 175, 183
HapII CCGG 2 cut(s) 41, 84
Hin1II CATG 1 cut(s) 131
HinfI GANTC 3 cut(s) 107, 124, 191
HpaII CCGG 2 cut(s) 41, 84
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 31, 33
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 31, 33
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 131
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 43, 76
LpnPI CCDG 8 cut(s) 38, 53, 54, 80, 93, 97, 134, 151
Lsp1109I GCAGC 3 cut(s) 35, 161, 169
MaeI CTAG 2 cut(s) 9, 15
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 38
MlyI GAGTC 2 cut(s) 101, 200
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 87, 97
MroNI GCCGGC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 41, 84
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 85
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 57, 72
NmuCI GTSAC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 25, 176, 184
PleI GAGTC 2 cut(s) 101, 199
PpsI GAGTC 2 cut(s) 101, 199
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 57, 72
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 3 cut(s) 24, 175, 183
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 101, 200
ScrFI CCNGG 1 cut(s) 68
SetI ASST 2 cut(s) 61, 66
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 132
SpeI ACTAGT 1 cut(s) 14
SsiI CCGC 3 cut(s) 21, 36, 74
SspMI CTAG 2 cut(s) 9, 15
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 2 cut(s) 150, 186
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 66
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 23, 174, 182
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 56
XspI CTAG 2 cut(s) 9, 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.