Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Reverse (-)

31292824 .. 31293122

Gene Structure 299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGTTCATCAAGTACTAATAACTCCGCAGCTGCGTACACCGCTCCGGCTTCTCAGCAGGGACCTTACGTCCAGGCGCCGCCTCCTGCCGGCTATCCCACCACGGTAGACGGCTCCGAGGTGCCCCATAGCGACGGTCGTGCCGAAACCAAGTCCAAGGGCGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

67

Amino Acids

6.74

Weight (kDa)

5.5

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 121
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	3 cut(s)	27, 42, 80
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	16, 38
AfiI	CCNNNNNNNGG	1 cut(s)	89
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	29, 32, 180, 188
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	76, 121
BbvI	GCAGC	4 cut(s)	19, 41, 167, 175
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	5 cut(s)	30, 33, 80, 181, 189
BlsI	GCNGC	5 cut(s)	31, 34, 81, 182, 190
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	4 cut(s)	63, 78, 115, 123
BmrFI	CCNGG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	102, 117, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	102, 117, 156
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	19, 41, 167, 175
Bsh1285I	CGRYCG	1 cut(s)	139
BshNI	GGYRCC	2 cut(s)	76, 121
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	47, 90
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	126
BspACI	CCGC	3 cut(s)	27, 42, 80
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	63, 78, 115, 123
BspT107I	GGYRCC	2 cut(s)	76, 121
BsrBI	CCGCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	102, 117, 156
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	106, 137
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	19, 41, 167, 175
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	15, 37
CviJI	RGCY	6 cut(s)	32, 50, 93, 114, 168, 180
CviKI_1	RGCY	6 cut(s)	32, 50, 93, 114, 168, 180
CviQI	GTAC	2 cut(s)	15, 37
DdeI	CTNAG	1 cut(s)	54
DinI	GGCGCC	1 cut(s)	78
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	156
FaiI	YATR	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	30, 33, 80, 181, 189
Fsp4HI	GCNGC	5 cut(s)	30, 33, 80, 181, 189
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	30, 33, 80, 181, 189
HaeII	RGCGCY	1 cut(s)	80
HapII	CCGG	2 cut(s)	47, 90
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	47, 90
Hpy166II	GTNNAC	2 cut(s)	39, 109
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	39, 109
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	106, 137
HpyCH4IV	ACGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	77
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	49, 119
LpnPI	CCDG	7 cut(s)	44, 59, 60, 86, 99, 103, 157
Lsp1109I	GCAGC	4 cut(s)	19, 41, 167, 175
MaeII	ACGT	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	93, 112
MroNI	GCCGGC	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	47, 90
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	91
NarI	GGCGCC	1 cut(s)	77
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	4 cut(s)	63, 78, 115, 123
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	31, 34, 81, 182, 190
PluTI	GGCGCC	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	63, 78, 115, 123
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	16, 38
RsaNI	GTAC	2 cut(s)	15, 37
SatI	GCNGC	5 cut(s)	30, 33, 80, 181, 189
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	4 cut(s)	34, 67, 72, 123
SfoI	GGCGCC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	3 cut(s)	27, 42, 80
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	106, 137
TaiI	ACGT	1 cut(s)	72
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	29, 32, 180, 188
VpaK11BI	GGWCC	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.