Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Reverse (-)

75245271 .. 75246419

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG527400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGTTCAAGTCCTAACTCCGCAGCTGTGTACACCGCTCCGGCTTCTCAACAGGGACCTTACGTCCAGGCGCCGCCTCCTGCAGGCTATCCCACTATGAGAAACGGCTCCGACTTGCCCGGGAGCGACGGTCGTGTCGAAACCAAGCCGAAGGGCGATGGCTTCTGGAAGGAGTTCATTATTACTTGCTTGAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

66

Amino Acids

6.96

Weight (kDa)

6.0

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	3 cut(s)	21, 36, 74
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	9, 193
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	2 cut(s)	120, 121
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	2 cut(s)	120, 121
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	24, 74
BlsI	GCNGC	2 cut(s)	25, 75
Bme1390I	CCNGG	3 cut(s)	68, 120, 121
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	57, 72, 109
BmrFI	CCNGG	3 cut(s)	68, 120, 121
BpuMI	CCSGG	2 cut(s)	120, 121
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	41, 120
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	30
BspACI	CCGC	3 cut(s)	21, 36, 74
BspLI	GGNNCC	3 cut(s)	57, 72, 109
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	66, 118, 119
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	56
Cfr9I	CCCGGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	6 cut(s)	26, 44, 87, 108, 148, 162
CviKI_1	RGCY	6 cut(s)	26, 44, 87, 108, 148, 162
CviQI	GTAC	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	134
DriI	GACNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	24, 74
Fsp4HI	GCNGC	2 cut(s)	24, 74
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	24, 74
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	2 cut(s)	41, 120
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	41, 120
Hpy166II	GTNNAC	2 cut(s)	31, 33
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	31, 33
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	145, 163
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	71
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	43, 113, 123
LpnPI	CCDG	8 cut(s)	38, 53, 54, 69, 80, 93, 133, 151
Lsp1109I	GCAGC	1 cut(s)	35
MaeII	ACGT	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	41, 120
MspR9I	CCNGG	3 cut(s)	68, 120, 121
MvaI	CCWGG	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	120, 121
NlaIV	GGNNCC	3 cut(s)	57, 72, 109
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	25, 75
PluTI	GGCGCC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	57, 72, 109
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	199
SatI	GCNGC	2 cut(s)	24, 74
Sau96I	GGNCC	1 cut(s)	56
SbfI	CCTGCAGG	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	68, 120, 121
SdaI	CCTGCAGG	1 cut(s)	85
SetI	ASST	3 cut(s)	28, 61, 66
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	121
Sse8387I	CCTGCAGG	1 cut(s)	85
SsiI	CCGC	3 cut(s)	21, 36, 74
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	66, 118, 119
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	138
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	199
Tru9I	TTAA	1 cut(s)	199
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	166
TspMI	CCCGGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	81
XmaI	CCCGGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.