Rw2G041490

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005236
Physical Location & Seq
Reverse (-)
67501851 .. 67503884
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041490.1

Sequence Viewer

Length: 225 bp
ATGAGTTCAAGTGCTAACTCCGCACCCCACGCGTTGCATCCGACCGCTTCGCAACAGGGACCTTACGTCCAGGCTCCGCCTCCAGCCGGCTATCCCACCATGAGAGACGACTCCGATTTGCCCCAGAACCATGGTCGTGTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGTCTTGTGTTGCTGTTGTATGCTGGATGCTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

6.22

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 22 - 74 1.3e-09 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 21, 45, 77
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 9
AhdI GACNNNNNGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 99
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 59
BmeRI GACNNNNNGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 60, 75
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 46, 202
BpmI CTGGAG 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 130, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 130, 153
BseGI GGATG 2 cut(s) 37, 217
BseLI CCNNNNNNNGG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 3 cut(s) 21, 45, 77
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 60, 75
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 130, 153
BssT1I CCWWGG 2 cut(s) 130, 153
Bst2UI CCWGG 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 88, 217
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 37, 217
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 99
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 20, 29
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 37, 217
Cac8I GCNNGC 2 cut(s) 88, 217
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 100, 131
CviJI RGCY 5 cut(s) 74, 86, 90, 165, 177
CviKI_1 RGCY 5 cut(s) 74, 86, 90, 165, 177
DriI GACNNNNNGTC 1 cut(s) 65
Eam1105I GACNNNNNGTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 130, 153
Eco47I GGWCC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 130, 153
ErhI CCWWGG 2 cut(s) 130, 153
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 2 cut(s) 103, 134
FaiI YATR 3 cut(s) 101, 132, 206
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 99, 130
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 66
HapII CCGG 1 cut(s) 87
Hin1II CATG 2 cut(s) 103, 134
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 42, 115
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 29
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 103, 134
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 41, 56, 83, 96, 100, 137, 154, 194
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 46, 202
MaeII ACGT 1 cut(s) 66
MluI ACGCGT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 20, 29
NaeI GCCGGC 1 cut(s) 88
NcoI CCATGG 1 cut(s) 130
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 103, 134
NlaIV GGNNCC 2 cut(s) 60, 75
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 60, 75
PspPI GGNCC 1 cut(s) 59
PspPPI RGGWCCY 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 64, 69
SfaNI GCATC 2 cut(s) 46, 202
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 135
SsiI CCGC 3 cut(s) 21, 45, 77
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 2 cut(s) 130, 153
TaiI ACGT 1 cut(s) 69
TseI GCWGC 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.