Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Reverse (-)

47080462 .. 47081834

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATGTCTTGCACATGTCTACTATTTGGTTGGTCCACTTGACCCAATCCCAGCATCAAGTAGATCTTGATCGGAGCTCCGACGACGTCGCGGGAAGCGGTGATGATGACGATGCGGAAGGATTCTGGATCGGGTTGACTCGGAGATCTACACAGCGCTCTACATCGCCTCGCCGCGATGCTGTCGTGGATGCGTTCGAGTTGCCGCCGGAGACGATCGCTGTCGGGGACGAGGTGGCACCGAGTTTGGCCCCAGCGAAAATGGCCAAGTCAAAGAATCACACCGCTCAGAACCAGTCCCTACGCAGTGAACGAAGCAGACATGCCCAGGTTGAGACTGAGAGGAGACTTAACAGCCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.42

Weight (kDa)

5.6

Isoelectric Point (pI)

74.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	2 cut(s)	92, 177
AciI	CCGC	6 cut(s)	92, 99, 116, 175, 206, 285
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	206, 329, 340
AlwI	GGATC	1 cut(s)	137
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	2 cut(s)	249, 264
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	34, 250
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	3 cut(s)	206, 329, 340
BfoI	RGCGCY	1 cut(s)	160
BglII	AGATCT	2 cut(s)	64, 146
BisI	GCNGC	2 cut(s)	175, 206
BlsI	GCNGC	2 cut(s)	176, 207
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 250
BmiI	GGNNCC	2 cut(s)	240, 252
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	4 cut(s)	64, 103, 169, 181
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	327, 358
Bse1I	ACTGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	327, 358
BseGI	GGATG	2 cut(s)	10, 196
BseJI	GATNNNNATC	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	302, 330
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	358
BseYI	CCCAGC	2 cut(s)	51, 253
Bsh1236I	CGCG	2 cut(s)	92, 177
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	251, 266
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	242, 283
BsmAI	GTCTC	3 cut(s)	206, 329, 340
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	242, 283
BsnI	GGCC	2 cut(s)	251, 266
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	64, 70, 129, 146, 216
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	6 cut(s)	92, 99, 116, 175, 206, 285
BspANI	GGCC	2 cut(s)	251, 266
BspCNI	CTCAG	2 cut(s)	301, 331
BspFNI	CGCG	2 cut(s)	92, 177
BspLI	GGNNCC	2 cut(s)	240, 252
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	327, 358
BssMI	GATC	5 cut(s)	64, 70, 129, 146, 216
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	288, 339
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	10, 196
BstFNI	CGCG	2 cut(s)	92, 177
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	67, 73, 132, 149, 219
BstMAI	GTCTC	3 cut(s)	206, 329, 340
BstMBI	GATC	5 cut(s)	64, 70, 129, 146, 216
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	19, 326
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	2 cut(s)	92, 177
BstX2I	RGATCY	2 cut(s)	64, 146
BstYI	RGATCY	2 cut(s)	64, 146
BsuRI	GGCC	2 cut(s)	251, 266
BtgI	CCRYGG	1 cut(s)	358
BtgZI	GCGATG	2 cut(s)	150, 192
BtsCI	GGATG	2 cut(s)	10, 196
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	34, 250
CviAII	CATG	3 cut(s)	16, 323, 359
CviJI	RGCY	4 cut(s)	78, 251, 266, 357
CviKI_1	RGCY	4 cut(s)	78, 251, 266, 357
DdeI	CTNAG	2 cut(s)	288, 339
DpnI	GATC	5 cut(s)	66, 72, 131, 148, 218
DpnII	GATC	5 cut(s)	64, 70, 129, 146, 216
EaeI	YGGCCR	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	34
Eco47III	AGCGCT	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	19, 326, 362
FaiI	YATR	3 cut(s)	17, 324, 360
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	242, 283
FatI	CATG	3 cut(s)	15, 322, 358
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	175, 206
FokI	GGATG	2 cut(s)	17, 203
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	175, 206
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	175, 206
GsaI	CCCAGC	2 cut(s)	55, 257
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	251, 266
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	19, 326, 362
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	123, 139, 277
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	4 cut(s)	21, 37, 138, 311
Hpy188I	TCNGA	4 cut(s)	75, 82, 144, 291
Hpy188III	TCNNGA	2 cut(s)	68, 127
Hpy8I	GTNNAC	4 cut(s)	21, 37, 138, 311
Hpy99I	CGWCG	3 cut(s)	86, 89, 92
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	288, 339
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	19, 326, 362
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	64, 70, 129, 146, 216
LmnI	GCTCC	2 cut(s)	75, 83
LpnPI	CCDG	7 cut(s)	65, 112, 222, 267, 308, 314, 341
LweI	GCATC	4 cut(s)	64, 103, 169, 181
MaeII	ACGT	1 cut(s)	87
MalI	GATC	5 cut(s)	66, 72, 131, 148, 218
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	5 cut(s)	64, 70, 129, 146, 216
MflI	RGATCY	2 cut(s)	64, 146
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	180, 226, 336
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	2 cut(s)	92, 177
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	358
NdeII	GATC	5 cut(s)	64, 70, 129, 146, 216
NlaIII	CATG	3 cut(s)	19, 326, 362
NlaIV	GGNNCC	2 cut(s)	240, 252
NspI	RCATGY	2 cut(s)	19, 326
PciI	ACATGT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	123, 277
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	176, 207
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	2 cut(s)	51, 253
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	240, 252
PspPI	GGNCC	2 cut(s)	34, 250
PsuI	RGATCY	2 cut(s)	64, 146
PsyI	GACNNNGTC	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	175, 206
Sau3AI	GATC	5 cut(s)	64, 70, 129, 146, 216
Sau96I	GGNCC	2 cut(s)	34, 250
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	4 cut(s)	80, 90, 237, 333
SfaNI	GCATC	4 cut(s)	64, 103, 169, 181
SinI	GGWCC	1 cut(s)	34
SsiI	CCGC	6 cut(s)	92, 99, 116, 175, 206, 285
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	358
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	198
TauI	GCSGC	2 cut(s)	177, 208
TfiI	GAWTC	2 cut(s)	123, 277
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	313
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	2 cut(s)	19, 326
XmiI	GTMKAC	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.