Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005236

Physical Location & Seq

Genomic Coordinates Reverse (-)

67973917 .. 67975824

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGTTCAAGTGCTAACTCCGCAGCAGCGTACCCCGCTCCGGCTTCCCAACAGGGACGTTACGTCCAGGCGCCACCTCCTGCCGGTTATCCCACCATGACAGACGATCAGTTGCCCCAGAGCCACGGTCCAGTCGAGACCAAGTCGAAGGGAGATGGATTCTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTATCCACAATTGAACAAATATGGTTATATGCTCTTAACCTCACCGACCGCTTCCCAACAGGGACCTTACGTCCAGGCTCCGCCTCCTGCCGGCTATCCTACCATGAGAGACGACTCTGATTTGCCCCAGAATCATGGTCGTGTGGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCTTGTGTTGCTGTTGTATGCTGGATGCTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

141

Amino Acids

14.87

Weight (kDa)

6.66

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYSTM	PF12734	25 - 65	4.4e-07	Cysteine-rich TM module stress tolerance
CYSTM	PF12734	92 - 140	9.9e-11	Cysteine-rich TM module stress tolerance

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16953
fragaria_vesca	FvH4_6g39640 FvH4_6g39660 FvH4_6g39680 FvH4_6g39682
pyrus_communis	pycom05g11920
rosa_chinensis	RchiOBHm_Chr2g0153691 RchiOBHm_Chr2g0153701 RchiOBHm_Chr2g0153741
rosa_laevigata	RLG00000020721 RLG00000020723 RLG00000025611
rosa_multiflora	Rmu_sc0000758.1_g000009
rosa_roxburghii	Rroxscaffold_2G00094760 Rroxscaffold_2G00094800
rosa_rugosa	Rorug02G0441400 Rorug02G0441500 Rorug06G0119900
rosa_samantha	Rh1AG307200 Rh2BG071300 Rh2CG072700 Rh2DG527400 Rh2DG527700 Rh4BG111000 Rh6AG228500
rosa_wichuraiana	Rw2G041460 Rw2G041470 Rw2G041480 Rw2G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	4 cut(s)	21, 36, 243, 275
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	3 cut(s)	40, 83, 284
AgsI	TTSAA	2 cut(s)	9, 208
AhdI	GACNNNNNGTC	2 cut(s)	62, 263
AjnI	CCWGG	2 cut(s)	66, 267
Alw26I	GTCTC	2 cut(s)	131, 297
ApeKI	GCWGC	5 cut(s)	23, 26, 179, 375, 383
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	128, 257
AsuHPI	GGTGA	2 cut(s)	228, 368
AvaII	GGWCC	2 cut(s)	128, 257
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	35, 38, 166, 362, 370
BccI	CCATC	2 cut(s)	149, 353
BciT130I	CCWGG	2 cut(s)	68, 269
BcoDI	GTCTC	2 cut(s)	131, 297
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	5 cut(s)	24, 27, 180, 376, 384
BlsI	GCNGC	5 cut(s)	25, 28, 181, 377, 385
Bme1390I	CCNGG	2 cut(s)	68, 269
Bme18I	GGWCC	2 cut(s)	128, 257
BmeRI	GACNNNNNGTC	2 cut(s)	62, 263
BmgT120I	GGNCC	2 cut(s)	128, 257
BmiI	GGNNCC	3 cut(s)	72, 258, 273
BmrFI	CCNGG	2 cut(s)	68, 269
BmsI	GCATC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	124, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 83, 284
Bse118I	RCCGGY	2 cut(s)	83, 284
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	68, 269
BseDI	CCNNGG	2 cut(s)	124, 351
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	40, 83, 284
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	5 cut(s)	35, 38, 166, 362, 370
Bsh1285I	CGRYCG	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	41, 84, 285
BslFI	GGGAC	2 cut(s)	69, 270
BslI	CCNNNNNNNGG	3 cut(s)	40, 83, 284
BsmAI	GTCTC	2 cut(s)	131, 297
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	69, 270
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	4 cut(s)	21, 36, 243, 275
BspLI	GGNNCC	3 cut(s)	72, 258, 273
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	83, 284
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	2 cut(s)	83, 284
BssECI	CCNNGG	2 cut(s)	124, 351
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	68, 269
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	286, 415
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	131, 297
BstMBI	GATC	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 35
BstNI	CCWGG	2 cut(s)	68, 269
BstSCI	CCNGG	2 cut(s)	66, 267
BstV1I	GCAGC	5 cut(s)	35, 38, 166, 362, 370
BstXI	CCANNNNNNTGG	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	286, 415
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	83, 284
Cfr13I	GGNCC	2 cut(s)	128, 257
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	97, 298, 329
CviJI	RGCY	6 cut(s)	44, 123, 272, 288, 363, 375
CviKI_1	RGCY	6 cut(s)	44, 123, 272, 288, 363, 375
CviQI	GTAC	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DriI	GACNNNNNGTC	2 cut(s)	62, 263
Eam1105I	GACNNNNNGTC	2 cut(s)	62, 263
EciI	GGCGGA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	128, 257
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	66, 267
EcoT14I	CCWWGG	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	3 cut(s)	100, 301, 332
FaiI	YATR	7 cut(s)	98, 216, 222, 224, 299, 330, 404
FaqI	GGGAC	2 cut(s)	69, 270
FatI	CATG	3 cut(s)	96, 297, 328
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	5 cut(s)	24, 27, 180, 376, 384
Fsp4HI	GCNGC	5 cut(s)	24, 27, 180, 376, 384
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	24, 27, 180, 376, 384
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	3 cut(s)	41, 84, 285
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	100, 301, 332
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	159, 308, 325
HpaII	CCGG	3 cut(s)	41, 84, 285
HphI	GGTGA	2 cut(s)	228, 368
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	136, 163, 367
HpyAV	CCTTC	3 cut(s)	142, 160, 364
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	3 cut(s)	58, 63, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 35
HpySE526I	ACGT	3 cut(s)	58, 63, 264
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	100, 301, 332
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	43, 277
Lsp1109I	GCAGC	5 cut(s)	35, 38, 166, 362, 370
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	3 cut(s)	58, 63, 264
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	108
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	203
MluCI	AATT	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	87, 244, 288
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	3 cut(s)	41, 84, 285
MspR9I	CCNGG	2 cut(s)	68, 269
MunI	CAATTG	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	68, 269
MwoI	GCNNNNNNNGC	2 cut(s)	20, 35
NaeI	GCCGGC	1 cut(s)	286
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	100, 301, 332
NlaIV	GGNNCC	3 cut(s)	72, 258, 273
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	159, 325
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	25, 28, 181, 377, 385
PleI	GAGTC	1 cut(s)	302
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	66, 267
PspGI	CCWGG	2 cut(s)	66, 267
PspN4I	GGNNCC	3 cut(s)	72, 258, 273
PspPI	GGNCC	2 cut(s)	128, 257
PspPPI	RGGWCCY	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	24, 27, 180, 376, 384
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	128, 257
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	68, 269
SetI	ASST	6 cut(s)	61, 66, 79, 236, 262, 267
SfaNI	GCATC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	2 cut(s)	128, 257
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	4 cut(s)	21, 36, 243, 275
SspDI	GGCGCC	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	66, 267
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	3 cut(s)	61, 66, 267
TaqI	TCGA	2 cut(s)	135, 146
TasI	AATT	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	159, 325
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	5 cut(s)	23, 26, 179, 375, 383
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	128, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.