Rh1AG307200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005236
Physical Location & Seq
Reverse (-)
54106205 .. 54109643
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG307200.1

Sequence Viewer

Length: 207 bp
ATGGATCGGAGCTCCGACGACGTCGCGATAAGCGGTGATGATGACGATGCAGAAGGATTTTGGATCGGGTTGACGTGGAGATCTACATGGCGCTCTACATCGCCTCACTGCGATGCTGTAGTCGATGCATTCAAGTTGCCGCCGGAGACGATCGCTACCGGGGACGAGATGGCACCGAGTTTGGCGCTGGCGATGTTTACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.42

Weight (kDa)

4.1

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 172
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 33, 140
AclWI GGATC 2 cut(s) 12, 71
AcyI GRCGYC 1 cut(s) 21
AgsI TTSAA 1 cut(s) 133
AjiI CACGTC 1 cut(s) 75
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 12, 71
AspLEI GCGC 2 cut(s) 93, 187
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 2 cut(s) 94, 188
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 37, 103, 115
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 143, 159
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 4 cut(s) 4, 63, 80, 150
Bsp68I TCGCGA 1 cut(s) 26
BspACI CCGC 2 cut(s) 33, 140
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 12, 71
BspT107I GGYRCC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 4, 63, 80, 150
BssNI GRCGYC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 189
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 94, 188
BstHHI GCGC 2 cut(s) 93, 187
BstKTI GATC 4 cut(s) 7, 66, 83, 153
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 4, 63, 80, 150
BstMCI CGRYCG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BtgZI GCGATG 2 cut(s) 84, 126
BtrI CACGTC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
BtuMI TCGCGA 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 2 cut(s) 93, 187
CviAII CATG 1 cut(s) 87
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
DpnI GATC 4 cut(s) 6, 65, 82, 152
DpnII GATC 4 cut(s) 4, 63, 80, 150
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 90
FaiI YATR 1 cut(s) 88
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 140
GlaI GCGC 2 cut(s) 92, 186
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 2 cut(s) 94, 188
HapII CCGG 2 cut(s) 143, 159
HhaI GCGC 2 cut(s) 93, 187
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 2 cut(s) 91, 185
HinP1I GCGC 2 cut(s) 91, 185
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HpaII CCGG 2 cut(s) 143, 159
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 72, 198
Hpy188I TCNGA 2 cut(s) 9, 16
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 72, 198
Hpy99I CGWCG 3 cut(s) 20, 23, 26
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 21, 74
HpyCH4V TGCA 2 cut(s) 50, 128
HpySE526I ACGT 2 cut(s) 21, 74
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 2 cut(s) 91, 185
Kzo9I GATC 4 cut(s) 4, 63, 80, 150
LmnI GCTCC 2 cut(s) 9, 17
LpnPI CCDG 3 cut(s) 156, 172, 173
LweI GCATC 3 cut(s) 37, 103, 115
MaeII ACGT 2 cut(s) 21, 74
MalI GATC 4 cut(s) 6, 65, 82, 152
MboI GATC 4 cut(s) 4, 63, 80, 150
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 143, 159
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 1 cut(s) 26
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 4, 63, 80, 150
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 174
NruI TCGCGA 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 130
PctI GAATGC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 141
Ple19I CGATCG 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 20
PvuI CGATCG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 14
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 4 cut(s) 4, 63, 80, 150
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 14, 24, 77
SfaNI GCATC 3 cut(s) 37, 103, 115
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 111
SsiI CCGC 2 cut(s) 33, 140
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 158
TaiI ACGT 2 cut(s) 24, 77
TaqI TCGA 1 cut(s) 123
TauI GCSGC 1 cut(s) 142
TscAI CASTG 1 cut(s) 113
TspRI CASTG 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 20
ZraI GACGTC 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.