AT2G18420

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004300
Physical Location & Seq
Forward (+)
7993801 .. 7994554
754 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18420.2

Sequence Viewer

Length: 285 bp
ATGGCTGTATTCAGAGTCTTGCTTGCTTCTCTTCTCATATCTCTTCTTGTCCTCGACTTCGTCCATGCCGATATGGTGACGTCGAATGACGCCCCTAAAATCGATTGCAACAGCAGGTGCCAAGAGCGGTGCAGTCTTTCGAGTAGGCCAAATCTTTGTCACAGAGCGTGCGGGACTTGCTGCGCTAGGTGCAACTGCGTGGCACCGGGCACATCCGGAAACTACGACAAATGTCCGTGCTATGGTAGCCTAACCACCCACGGAGGACGCAGAAAGTGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

94

Amino Acids

10.15

Weight (kDa)

8.67

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 11 - 70 4.3e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 105
AatII GACGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 2 cut(s) 117, 202
AccBSI CCGCTC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 2 cut(s) 127, 171
AcyI GRCGYC 2 cut(s) 80, 90
AfiI CCNNNNNNNGG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 2 cut(s) 117, 202
BbvI GCAGC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 119, 204
BmrFI CCNGG 1 cut(s) 207
BoxI GACNNNNGTC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 2 cut(s) 80, 90
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 151
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 2 cut(s) 117, 202
BshVI ATCGAT 1 cut(s) 102
BsiSI CCGG 2 cut(s) 206, 216
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 215
BspACI CCGC 2 cut(s) 127, 171
BspANI GGCC 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 119, 204
BspMI ACCTGC 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 117, 202
BsrBI CCGCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 259
BssNI GRCGYC 2 cut(s) 80, 90
Bst6I CTCTTC 2 cut(s) 36, 48
BstACI GRCGYC 2 cut(s) 80, 90
BstC8I GCNNGC 2 cut(s) 24, 169
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 177, 189, 246
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 24, 169
CfoI GCGC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 2 cut(s) 98, 276
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 5, 148, 249
CviKI_1 RGCY 3 cut(s) 5, 148, 249
Eam1104I CTCTTC 2 cut(s) 36, 48
EarI CTCTTC 2 cut(s) 36, 48
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 38, 66, 74, 243
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 148
HapII CCGG 2 cut(s) 206, 216
HgaI GACGC 2 cut(s) 98, 276
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 80, 90
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 1 cut(s) 15
HpaII CCGG 2 cut(s) 206, 216
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 216
Hpy99I CGWCG 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 108, 132, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 189, 246
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 2 cut(s) 80, 90
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 183
Kpn2I TCCGGA 1 cut(s) 215
LpnPI CCDG 3 cut(s) 100, 219, 229
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 76, 158
MbiI CCGCTC 1 cut(s) 127
MboII GAAGA 2 cut(s) 23, 35
MhlI GDGCHC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 2 cut(s) 62, 257
MroI TCCGGA 1 cut(s) 215
MseI TTAA 1 cut(s) 283
MspI CCGG 2 cut(s) 206, 216
MspR9I CCNGG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 177, 189, 246
NciI CCSGG 1 cut(s) 207
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 119, 204
NmuCI GTSAC 2 cut(s) 76, 158
PaqCI CACCTGC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PshAI GACNNNNGTC 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 119, 204
PsyI GACNNNGTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 181
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 212
SetI ASST 3 cut(s) 83, 119, 191
SsiI CCGC 2 cut(s) 127, 171
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 1 cut(s) 83
TaqI TCGA 4 cut(s) 54, 83, 102, 140
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseFI GTSAC 2 cut(s) 76, 158
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 2 cut(s) 76, 158
TspGWI ACGGA 2 cut(s) 225, 276
Tth111I GACNNNGTC 1 cut(s) 59
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.