AT4G09610

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004300
Physical Location & Seq
Reverse (-)
6074770 .. 6075645
876 bp
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UTR
Exon/CDS
Intron
AT4G09610.1

Sequence Viewer

Length: 300 bp
ATGGCAGTCTTCCGAAGTACACTGGTTCTGTTACTAATCATCGTCTGTCTCACCACTTATGAGCTTCACGTCCACGCTGCTGATGGTGCAAAGGTCGGTGAAGGCGTAGTGAAAATCGATTGTGGTGGGAGATGCAAAGATAGATGCAGCAAATCTTCGAGAACGAAGCTATGCTTGAGAGCGTGCAACAGCTGTTGTTCCCGCTGCAACTGTGTGCCACCTGGTACTTCTGGAAACACCCACCTTTGTCCTTGCTACGCCTCCATTACCACTCACGGTGGCCGCCTCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005576 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

99

Amino Acids

10.53

Weight (kDa)

8.98

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 40 - 99 5.7e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 283
AcoI YGGCCR 1 cut(s) 280
AfaI GTAC 2 cut(s) 19, 226
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 3 cut(s) 64, 169, 192
AluI AGCT 3 cut(s) 64, 169, 192
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 77, 147, 204
AsuHPI GGTGA 2 cut(s) 43, 110
BaeGI GKGCMC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 64, 159, 191
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 53
BisI GCNGC 4 cut(s) 78, 148, 205, 283
BlsI GCNGC 4 cut(s) 79, 149, 206, 284
Bme1390I CCNGG 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 122, 134
BpuEI CTTGAG 2 cut(s) 196, 272
Bsa29I ATCGAT 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 117
BseNI ACTGG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 3 cut(s) 64, 159, 191
BshFI GGCC 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 296
BspACI CCGC 2 cut(s) 202, 283
BspANI GGCC 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 117
BsrI ACTGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 212, 278
BstC8I GCNNGC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 86, 291
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 64, 159, 191
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 117
BtrI CACGTC 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 117
CsiI ACCWGGT 1 cut(s) 220
Csp6I GTAC 2 cut(s) 18, 225
CviJI RGCY 4 cut(s) 64, 169, 192, 282
CviKI_1 RGCY 4 cut(s) 64, 169, 192, 282
CviQI GTAC 2 cut(s) 18, 225
EaeI YGGCCR 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 220
FaiI YATR 2 cut(s) 60, 172
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 78, 148, 205, 283
Fsp4HI GCNGC 4 cut(s) 78, 148, 205, 283
GluI GCNGC 4 cut(s) 78, 148, 205, 283
HaeIII GGCC 1 cut(s) 282
HphI GGTGA 2 cut(s) 43, 110
Hpy166II GTNNAC 2 cut(s) 20, 73
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 159, 231
Hpy8I GTNNAC 2 cut(s) 20, 73
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 212, 278
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 89, 135, 147, 186, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 291
HpySE526I ACGT 1 cut(s) 69
LpnPI CCDG 4 cut(s) 8, 207, 216, 234
Lsp1109I GCAGC 3 cut(s) 64, 159, 191
LweI GCATC 2 cut(s) 122, 134
MabI ACCWGGT 1 cut(s) 220
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 30
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 296
MnlI CCTC 2 cut(s) 271, 296
MseI TTAA 1 cut(s) 298
MspA1I CMGCKG 2 cut(s) 192, 204
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 86, 291
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PkrI GCNGC 4 cut(s) 79, 149, 206, 284
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 2 cut(s) 19, 226
RsaNI GTAC 2 cut(s) 18, 225
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 4 cut(s) 78, 148, 205, 283
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 296
SetI ASST 7 cut(s) 66, 72, 96, 171, 194, 223, 246
SexAI ACCWGGT 1 cut(s) 220
SfaNI GCATC 2 cut(s) 122, 134
SmlI CTYRAG 2 cut(s) 175, 287
SmoI CTYRAG 2 cut(s) 175, 287
SsiI CCGC 2 cut(s) 202, 283
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 212, 278
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 117, 158
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TscAI CASTG 1 cut(s) 27
TseI GCWGC 3 cut(s) 77, 147, 204
TspRI CASTG 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.