MD00G1092400.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0004300
Physical Location & Seq
Reverse (-)
19538296 .. 19538454
159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1092400.v1.1.491

Sequence Viewer

Length: 159 bp
ATGGCAATATTTACAGTCTGTGATGGAGCTTGTGCTGTGAGGTGTTCAAAATCGTCGAGGCCTAATCTGTGTCATAGGGCATGCGGGACGTGTTGCAATAGATGCAACTGCGTTCCGCCTGACACTTTCAACAACTATGACGTATGCTCTTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

53

Amino Acids

5.63

Weight (kDa)

8.07

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 7 - 50 1.7e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 116
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 48, 130
AjiI CACGTC 1 cut(s) 90
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AoxI GGCC 1 cut(s) 59
BccI CCATC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 90
BmsI GCATC 1 cut(s) 92
BshFI GGCC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 61
BspACI CCGC 2 cut(s) 84, 116
BspANI GGCC 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 61
BtrI CACGTC 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 82
CviAII CATG 1 cut(s) 81
CviJI RGCY 2 cut(s) 29, 61
CviKI_1 RGCY 2 cut(s) 29, 61
EciI GGCGGA 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 61
FaeI CATG 1 cut(s) 84
FaiI YATR 5 cut(s) 75, 82, 138, 145, 157
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 80
FauI CCCGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 89, 141
HpyCH4V TGCA 2 cut(s) 96, 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 89, 141
Hsp92II CATG 1 cut(s) 84
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 1 cut(s) 132
LweI GCATC 1 cut(s) 92
MaeII ACGT 2 cut(s) 89, 141
MnlI CCTC 2 cut(s) 33, 51
MwoI GCNNNNNNNGC 1 cut(s) 102
NlaIII CATG 1 cut(s) 84
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 61
SetI ASST 4 cut(s) 31, 44, 92, 144
SfaNI GCATC 1 cut(s) 92
SgeI CNNG 6 cut(s) 42, 69, 93, 97, 102, 131
SphI GCATGC 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 2 cut(s) 84, 116
SspI AATATT 1 cut(s) 9
StuI AGGCCT 1 cut(s) 61
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 92, 144
TaqI TCGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.