Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8500929.1

Orthogroup ID

OG0004300

Physical Location & Seq

Genomic Coordinates Forward (+)

987 .. 2564

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8500929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgatgttcaaggctctaattgctcaacttctcgtttcttttctcattctccaacttgttagttctgcttttcaggtgaccacacctcctgttggatcccctatttccccaaaaatagattgtgatggagcttgtaacgtaaggtgtggtttatcgtcaaggccaaatctatgcaagagggcatgtgggacgtgttgttccagatgcggttgtgttccacctggtacttccggtcactatgaagaaagctccgagaaaccagcaaagaagtctagggttggaactcgtagggaaaaggtcgcagcctatccgacggtaccccagggtggattgtggttccctgctgcatcgacgagcggcgggtgttgccggatgggttattgggatctctggcctctcaatcttgctttctatcaaacggggtggagtaggtggccagtggccggatcatggcggcggcatgccatggatcctacggcgctgggtgcttctctgccgtgggatgctagacggatattgcagtggtggcctcaagttcttaagctgaaggacgcagactctcgaagttctgtctcggagttatgggcttctactgcaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

200

Amino Acids

21.87

Weight (kDa)

9.35

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18420 AT2G18420 AT4G09600 AT4G09610
fragaria_vesca	FvH4_1g11830 FvH4_2g38490 FvH4_2g38500 FvH4_2g38500
malus_domestica	MD00G1092400.v1.1 MD02G1132300.v1.1 MD02G1132400.v1.1 MD15G1012400.v1.1 MD15G1012600.v1.1 MD15G1246100.v1.1
prunus_persica	Prupe.1G365700_v2.0.a1 Prupe.7G168200_v2.0.a1
pyrus_communis	pycom02g10390 pycom15g21600
rosa_chinensis	RchiOBHm_Chr2g0099441 RchiOBHm_Chr6g0302811
rosa_laevigata	RLG00000016882
rosa_multiflora	Rmu_co8500929.1_g000001 Rmu_sc0002487.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165300
rosa_rugosa	Rorug06G0317400
rosa_samantha	Rh2AG129500 Rh2BG132500 Rh2CG133300 Rh2DG133600 Rh6AG430600
rosa_wichuraiana	Rw2G009970 Rw6G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	357
AciI	CCGC	5 cut(s)	207, 357, 360, 454, 457
AclWI	GGATC	6 cut(s)	90, 103, 393, 454, 464, 477
AcoI	YGGCCR	2 cut(s)	434, 441
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	226, 318
AfiI	CCNNNNNNNGG	4 cut(s)	92, 326, 443, 450
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	220, 321
AloI	GAACNNNNNNTCC	2 cut(s)	181, 213
AluBI	AGCT	3 cut(s)	131, 249, 544
AluI	AGCT	3 cut(s)	131, 249, 544
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	6 cut(s)	90, 103, 393, 454, 464, 477
AoxI	GGCC	5 cut(s)	161, 392, 434, 441, 527
ApeKI	GCWGC	2 cut(s)	302, 344
Asp718I	GGTACC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	436
BamHI	GGATCC	2 cut(s)	95, 469
BanI	GGYRCC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	314, 331
BccI	CCATC	2 cut(s)	119, 367
BceAI	ACGGC	2 cut(s)	481, 492
BciT130I	CCWGG	2 cut(s)	222, 323
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	273, 507
BfoI	RGCGCY	1 cut(s)	482
BfrI	CTTAAG	1 cut(s)	539
BisI	GCNGC	5 cut(s)	303, 345, 358, 455, 458
BlsI	GCNGC	5 cut(s)	304, 346, 359, 456, 459
Bme1390I	CCNGG	2 cut(s)	222, 323
BmgBI	CACGTC	1 cut(s)	192
BmiI	GGNNCC	4 cut(s)	97, 318, 338, 471
BmrFI	CCNGG	2 cut(s)	222, 323
BmsI	GCATC	3 cut(s)	194, 356, 493
BpuEI	CTTGAG	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	321, 322, 465, 497
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 326, 443, 450
Bse1I	ACTGG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	222, 323
BseDI	CCNNGG	4 cut(s)	321, 322, 465, 497
BseGI	GGATG	2 cut(s)	378, 508
BseLI	CCNNNNNNNGG	4 cut(s)	92, 326, 443, 450
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	314, 331
BseYI	CCCAGC	1 cut(s)	481
BshFI	GGCC	5 cut(s)	163, 394, 436, 443, 529
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	231, 370, 444
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	92, 326, 443, 450
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	5 cut(s)	163, 394, 436, 443, 529
Bsp143I	GATC	4 cut(s)	95, 385, 446, 469
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	5 cut(s)	207, 357, 360, 454, 457
BspANI	GGCC	5 cut(s)	163, 394, 436, 443, 529
BspLI	GGNNCC	4 cut(s)	97, 318, 338, 471
BspPI	GGATC	6 cut(s)	90, 103, 393, 454, 464, 477
BspT107I	GGYRCC	1 cut(s)	316
BspTI	CTTAAG	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	4 cut(s)	321, 322, 465, 497
BssMI	GATC	4 cut(s)	95, 385, 446, 469
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	222, 323
Bst4CI	ACNGT	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	462
BstDSI	CCRYGG	2 cut(s)	465, 497
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	378, 508
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	98, 388, 449, 472
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	95, 385, 446, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 366, 485, 526, 593
BstNI	CCWGG	2 cut(s)	222, 323
BstNSI	RCATGY	2 cut(s)	186, 464
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	220, 321
BstV1I	GCAGC	2 cut(s)	314, 331
BstX2I	RGATCY	3 cut(s)	95, 385, 469
BstYI	RGATCY	3 cut(s)	95, 385, 469
BsuRI	GGCC	5 cut(s)	163, 394, 436, 443, 529
BtgI	CCRYGG	2 cut(s)	465, 497
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	378, 508
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	444, 527
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	481
CseI	GACGC	1 cut(s)	560
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	225, 317
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviAII	CATG	4 cut(s)	183, 450, 461, 466
CviQI	GTAC	2 cut(s)	225, 317
DpnI	GATC	4 cut(s)	97, 387, 448, 471
DpnII	GATC	4 cut(s)	95, 385, 446, 469
EaeI	YGGCCR	2 cut(s)	434, 441
Eco130I	CCWWGG	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	566
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	220, 321
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	186, 453, 464, 469
FaiI	YATR	7 cut(s)	172, 184, 240, 451, 462, 467, 583
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	4 cut(s)	182, 449, 460, 465
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	5 cut(s)	303, 345, 358, 455, 458
FokI	GGATG	2 cut(s)	385, 515
Fsp4HI	GCNGC	5 cut(s)	303, 345, 358, 455, 458
FspBI	CTAG	2 cut(s)	273, 507
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	5 cut(s)	303, 345, 358, 455, 458
GsaI	CCCAGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	5 cut(s)	163, 394, 436, 443, 529
HapII	CCGG	3 cut(s)	231, 370, 444
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	186, 453, 464, 469
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	3 cut(s)	231, 370, 444
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	253, 312, 577
Hpy188III	TCNNGA	2 cut(s)	201, 561
Hpy99I	CGWCG	2 cut(s)	316, 355
HpyAV	CCTTC	1 cut(s)	541
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	138, 191, 599
HpyCH4V	TGCA	4 cut(s)	174, 347, 520, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 366, 485, 526, 593
HpySE526I	ACGT	3 cut(s)	138, 191, 599
Hsp92II	CATG	4 cut(s)	186, 453, 464, 469
HspAI	GCGC	1 cut(s)	479
KpnI	GGTACC	1 cut(s)	320
Kzo9I	GATC	4 cut(s)	95, 385, 446, 469
LmnI	GCTCC	2 cut(s)	128, 254
Lsp1109I	GCAGC	2 cut(s)	314, 331
LweI	GCATC	3 cut(s)	194, 356, 493
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	2 cut(s)	273, 507
MaeII	ACGT	3 cut(s)	138, 191, 599
MaeIII	GTNAC	3 cut(s)	76, 134, 233
MalI	GATC	4 cut(s)	97, 387, 448, 471
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	4 cut(s)	95, 385, 446, 469
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	3 cut(s)	95, 385, 469
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	4 cut(s)	73, 76, 259, 335
MnlI	CCTC	4 cut(s)	96, 171, 405, 540
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	1 cut(s)	540
Msp20I	TGGCCA	1 cut(s)	436
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	3 cut(s)	231, 370, 444
MspR9I	CCNGG	2 cut(s)	222, 323
MvaI	CCWGG	2 cut(s)	222, 323
MwoI	GCNNNNNNNGC	5 cut(s)	20, 366, 485, 526, 593
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	95, 385, 446, 469
NlaIII	CATG	4 cut(s)	186, 453, 464, 469
NlaIV	GGNNCC	4 cut(s)	97, 318, 338, 471
NmuCI	GTSAC	2 cut(s)	76, 233
NspI	RCATGY	2 cut(s)	186, 464
PaeI	GCATGC	1 cut(s)	464
PasI	CCCWGGG	1 cut(s)	322
PkrI	GCNGC	5 cut(s)	304, 346, 359, 456, 459
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	220, 321
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	220, 321
PspN4I	GGNNCC	4 cut(s)	97, 318, 338, 471
PsuI	RGATCY	3 cut(s)	95, 385, 469
RsaI	GTAC	2 cut(s)	226, 318
RsaNI	GTAC	2 cut(s)	225, 317
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	5 cut(s)	303, 345, 358, 455, 458
Sau3AI	GATC	4 cut(s)	95, 385, 446, 469
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	222, 323
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	3 cut(s)	194, 356, 493
SmlI	CTYRAG	2 cut(s)	531, 539
SmoI	CTYRAG	2 cut(s)	531, 539
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	5 cut(s)	207, 357, 360, 454, 457
SspMI	CTAG	2 cut(s)	273, 507
StyD4I	CCNGG	2 cut(s)	220, 321
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	3 cut(s)	141, 194, 602
TaqI	TCGA	2 cut(s)	350, 562
TasI	AATT	1 cut(s)	18
TauI	GCSGC	3 cut(s)	360, 457, 460
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	444, 527
TseFI	GTSAC	2 cut(s)	76, 233
TseI	GCWGC	2 cut(s)	302, 344
Tsp45I	GTSAC	2 cut(s)	76, 233
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	2 cut(s)	444, 527
Vha464I	CTTAAG	1 cut(s)	539
XceI	RCATGY	2 cut(s)	186, 464
XspI	CTAG	2 cut(s)	273, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.