Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004300

Physical Location & Seq

Genomic Coordinates Forward (+)

6465917 .. 6466904

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGAGCCTTGTCGAAAACGCTGATGGCTTCGCTGGTTCTCTCTTTTCTGCTTCTTCTCCTCGCCCAAGCAGATCACCAGACCGTCATGGACCTCAATCATGGAGGAGCTCCCAGCCCCTTACCCCCTGTCCTAGATTGTGGAGTGGCCTGTGCTGGAAGGTGCAAGCTATCGTCGCGGCCGCGCCTGTGCAAAAGGGCCTGCGGAAGCTGCTGTAGCAAGTGCAACTGTGTTCCTCCGGGCACTGCCGGCAACTTGGAGGCTTGCCCTTGCTATGCTAATCTCACCACCCACAACCAAACCCGCAAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

106

Amino Acids

10.94

Weight (kDa)

8.8

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	46 - 105	8.9e-21	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18420 AT2G18420 AT4G09600 AT4G09610
fragaria_vesca	FvH4_1g11830 FvH4_2g38490 FvH4_2g38500 FvH4_2g38500
malus_domestica	MD00G1092400.v1.1 MD02G1132300.v1.1 MD02G1132400.v1.1 MD15G1012400.v1.1 MD15G1012600.v1.1 MD15G1246100.v1.1
prunus_persica	Prupe.1G365700_v2.0.a1 Prupe.7G168200_v2.0.a1
pyrus_communis	pycom02g10390 pycom15g21600
rosa_chinensis	RchiOBHm_Chr2g0099441 RchiOBHm_Chr6g0302811
rosa_laevigata	RLG00000016882
rosa_multiflora	Rmu_co8500929.1_g000001 Rmu_sc0002487.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165300
rosa_rugosa	Rorug06G0317400
rosa_samantha	Rh2AG129500 Rh2BG132500 Rh2CG133300 Rh2DG133600 Rh6AG430600
rosa_wichuraiana	Rw2G009970 Rw6G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	178, 184
AciI	CCGC	4 cut(s)	178, 182, 204, 304
AcoI	YGGCCR	1 cut(s)	179
AluBI	AGCT	3 cut(s)	110, 169, 210
AluI	AGCT	3 cut(s)	110, 169, 210
Alw21I	GWGCWC	1 cut(s)	112
AoxI	GGCC	3 cut(s)	147, 179, 198
ApeKI	GCWGC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	91, 198
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	68, 277
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	3 cut(s)	179, 182, 211
BlsI	GCNGC	3 cut(s)	180, 183, 212
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 198
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	50, 120
BseSI	GKGCMC	1 cut(s)	245
BseX3I	CGGCCG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	178, 184
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	3 cut(s)	149, 181, 200
BsiEI	CGRYCG	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	239, 249
BsnI	GGCC	3 cut(s)	149, 181, 200
Bsp1286I	GDGCHC	2 cut(s)	112, 245
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	4 cut(s)	178, 182, 204, 304
BspANI	GGCC	3 cut(s)	149, 181, 200
BspFNI	CGCG	2 cut(s)	178, 184
BspLI	GGNNCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	85, 230
BstC8I	GCNNGC	4 cut(s)	167, 202, 250, 265
BstFNI	CGCG	2 cut(s)	178, 184
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 210, 216, 249
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	2 cut(s)	178, 184
BstV1I	GCAGC	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	149, 181, 200
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	4 cut(s)	167, 202, 250, 265
CciNI	GCGGCCGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	91, 198
CviAII	CATG	2 cut(s)	88, 101
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	179
EagI	CGGCCG	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	2 cut(s)	91, 104
FaiI	YATR	3 cut(s)	89, 102, 276
FatI	CATG	2 cut(s)	87, 100
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	179, 182, 211
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	3 cut(s)	179, 182, 211
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	179, 182, 211
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	149, 181, 200
HapII	CCGG	2 cut(s)	239, 249
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	91, 104
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	239, 249
HphI	GGTGA	2 cut(s)	68, 277
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	85, 230
HpyCH4V	TGCA	3 cut(s)	165, 192, 225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 210, 216, 249
Hsp92II	CATG	2 cut(s)	91, 104
HspAI	GCGC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	5, 107, 115
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	134
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	2 cut(s)	112, 245
MnlI	CCTC	5 cut(s)	71, 98, 104, 246, 253
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	1 cut(s)	316
MspI	CCGG	2 cut(s)	239, 249
MspR9I	CCNGG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	178, 184
MwoI	GCNNNNNNNGC	4 cut(s)	175, 210, 216, 249
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	2 cut(s)	91, 104
NlaIV	GGNNCC	1 cut(s)	7
NotI	GCGGCCGC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	180, 183, 212
Psp124BI	GAGCTC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	91, 198
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	3 cut(s)	179, 182, 211
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	91, 198
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	112, 245
SetI	ASST	5 cut(s)	96, 112, 164, 171, 212
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	91
SsiI	CCGC	4 cut(s)	178, 182, 204, 304
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	85, 230
TaqI	TCGA	1 cut(s)	14
TauI	GCSGC	2 cut(s)	181, 184
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	210
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	91
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.