MD02G1132400.v1.1

Gibberellin-regulated protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004300
Physical Location & Seq
Forward (+)
10710065 .. 10711326
1262 bp
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UTR
Exon/CDS
Intron
MD02G1132400.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTTTGTCATCAAGAACGCTCATGGCTTCCATGCTTGTCTCTTTTATGCTTCTTCAATGTTTCACTGAAGCCACTGATCACCAGTACGAGACGATGGGCGTCAATGGAGCACCGAGCCCCAAGCCCCCAACTTTAGATTGTGGAGTGGCATGTGAAGGAAGGTGCAAGCTATCATCGAGGCCTCGTCTTTGCAAAAGGGCATGTGGGAGTTGTTGTGACAAGTGCAGTTGCGTTCCTCCTGGCACTTCTGGCAACTACGAGTCTTGTCCTTGCTATTTTAACCTCAAAACCCACAACCAAACCCGCAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

107

Amino Acids

11.51

Weight (kDa)

8.6

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 106 1.9e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 46, 86
AoxI GGCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 46, 86
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 46, 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 115, 122
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 85
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 46, 86
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 156, 207
BstSCI CCNGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 66, 75
Cac8I GCNNGC 1 cut(s) 170
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 88
CviAII CATG 4 cut(s) 25, 34, 153, 204
CviJI RGCY 7 cut(s) 5, 29, 74, 120, 127, 172, 184
CviKI_1 RGCY 7 cut(s) 5, 29, 74, 120, 127, 172, 184
CviQI GTAC 1 cut(s) 88
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 4 cut(s) 28, 37, 156, 207
FaiI YATR 5 cut(s) 26, 35, 50, 154, 205
FatI CATG 4 cut(s) 24, 33, 152, 203
FauI CCCGC 1 cut(s) 314
FbaI TGATCA 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 184
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 28, 37, 156, 207
HinfI GANTC 1 cut(s) 263
HphI GGTGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 152, 156
HpyCH4V TGCA 3 cut(s) 168, 195, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 28, 37, 156, 207
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 98, 228, 237, 255
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 115, 122
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 174, 195, 249, 296
MseI TTAA 2 cut(s) 282, 319
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 1 cut(s) 79
NlaIII CATG 4 cut(s) 28, 37, 156, 207
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 2 cut(s) 156, 207
PceI AGGCCT 1 cut(s) 184
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 282, 319
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 2 cut(s) 115, 122
SetI ASST 3 cut(s) 167, 174, 288
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 307
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 1 cut(s) 179
Tru1I TTAA 2 cut(s) 282, 319
Tru9I TTAA 2 cut(s) 282, 319
TscAI CASTG 2 cut(s) 73, 82
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspRI CASTG 2 cut(s) 73, 82
XceI RCATGY 2 cut(s) 156, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.