Rh2BG132500

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004300
Physical Location & Seq
Forward (+)
11310641 .. 11311915
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG132500.1

Sequence Viewer

Length: 318 bp
ATGGGAGCCTTGTCGAGAACGTTGACGGCTTCACTGGTTCTCTCTTTTCTGCTTCTCCTTCTGGCCGAAGCAGATCACCAGACTGTCATGGACCTCAATCACGCTGCAGCTCCCAGCCCCTTACCCCCCACCATAGATTGTGGAGTGGCTTGTAATGGAAGGTGCAAACTATCGTCCCGGCCACGCCTGTGCAAAAGGGCGTGCGGAAGTTGCTGTAACAAGTGCAACTGTGTTCCTCCGGGCACTGCCGGCAACTTGGATGCTTGCCCTTGCTACGCTAATCTCACCACCCACAACCAAACCCGCAAATGCCCTTAA

Protein Analysis

105

Amino Acids

11.03

Weight (kDa)

8.67

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 46 - 105 6e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 204, 304
AclI AACGTT 1 cut(s) 20
AcoI YGGCCR 2 cut(s) 63, 179
AleI CACNNNNGTG 1 cut(s) 187
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 63, 179
ApeKI GCWGC 2 cut(s) 104, 107
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 2 cut(s) 178, 240
AsuHPI GGTGA 2 cut(s) 68, 277
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 91, 119
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 178, 240
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 105, 108
BlsI GCNGC 2 cut(s) 106, 109
Bme1390I CCNGG 2 cut(s) 178, 240
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 178, 240
BmsI GCATC 1 cut(s) 250
BpuMI CCSGG 2 cut(s) 178, 240
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 2 cut(s) 91, 119
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 65, 181
BsiSI CCGG 3 cut(s) 178, 239, 249
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 65, 181
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 2 cut(s) 204, 304
BspANI GGCC 2 cut(s) 65, 181
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 248
BssMI GATC 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 85, 230
BstC8I GCNNGC 3 cut(s) 202, 250, 265
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 210, 249
BstSCI CCNGG 2 cut(s) 176, 238
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 91, 119
BsuRI GGCC 2 cut(s) 65, 181
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 32, 243
Cac8I GCNNGC 3 cut(s) 202, 250, 265
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 1 cut(s) 88
CviJI RGCY 7 cut(s) 8, 29, 65, 110, 117, 149, 181
CviKI_1 RGCY 7 cut(s) 8, 29, 65, 110, 117, 149, 181
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 63, 179
Eco47I GGWCC 1 cut(s) 91
FaeI CATG 1 cut(s) 91
FaiI YATR 2 cut(s) 89, 134
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 105, 108
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 105, 108
GluI GCNGC 2 cut(s) 105, 108
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 65, 181
HapII CCGG 3 cut(s) 178, 239, 249
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HpaII CCGG 3 cut(s) 178, 239, 249
HphI GGTGA 2 cut(s) 68, 277
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 68, 153
HpyCH4III ACNGT 2 cut(s) 85, 230
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 107, 165, 192, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 249
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 91
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 5, 115
LpnPI CCDG 8 cut(s) 20, 47, 92, 127, 191, 200, 252, 262
Lsp1109I GCAGC 2 cut(s) 91, 119
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 245
MnlI CCTC 2 cut(s) 104, 246
MroNI GCCGGC 1 cut(s) 248
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 187
MspI CCGG 3 cut(s) 178, 239, 249
MspR9I CCNGG 2 cut(s) 178, 240
MwoI GCNNNNNNNGC 2 cut(s) 210, 249
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 2 cut(s) 178, 240
NdeII GATC 1 cut(s) 73
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 7
OliI CACNNNNGTG 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 106, 109
Psp1406I AACGTT 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 187
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 2 cut(s) 105, 108
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 178, 240
SduI GDGCHC 1 cut(s) 245
SetI ASST 4 cut(s) 23, 96, 112, 164
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 187
SsiI CCGC 2 cut(s) 204, 304
StyD4I CCNGG 2 cut(s) 176, 238
TaaI ACNGT 2 cut(s) 85, 230
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 14
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 2 cut(s) 39, 250
TseI GCWGC 2 cut(s) 104, 107
TspRI CASTG 2 cut(s) 39, 250
VpaK11BI GGWCC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.