Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004300

Physical Location & Seq

Genomic Coordinates Forward (+)

15622437 .. 15623382

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTAAGCAAAGATATTAGTGGTAAACAAAAAACAAAGCAAACACAAAACAAAAGAAGAAAACATTGGTTAAAAGGAGATGAGTTGGAGCGCAGCCTGGCAGTCCAAACTAATATACTCCCTTCTTCTTCTTCCATAAATATAATCAAGATGGCTTTGTCATCAAGAATGCTCATAGCTTCCATGCTTGTCTCTTTTCTACTTCTCCAATATCTCACTGAAGCAGCTGATCATCAGTATAAGACGATGGACGTCAATGGAGCCCCAAGCCCCCAGGCCCCGACATTAGATTGTGGAGTGGCATGTGAAGGAAGGTGCAAATTATCATCGAGGCCTCGTCTCTGCAAAAGGGCATGTGGGAGTTGTTGTGACAAGTGCAATTGTGTTCCTCCAGGCACTTCTGGCAACTATGAGTCATGTCCTTGCTATTTTAACCTCAAAACCCACAATGACACCCGCAAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

9.22

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18420 AT2G18420 AT4G09600 AT4G09610
fragaria_vesca	FvH4_1g11830 FvH4_2g38490 FvH4_2g38500 FvH4_2g38500
malus_domestica	MD00G1092400.v1.1 MD02G1132300.v1.1 MD02G1132400.v1.1 MD15G1012400.v1.1 MD15G1012600.v1.1 MD15G1246100.v1.1
prunus_persica	Prupe.1G365700_v2.0.a1 Prupe.7G168200_v2.0.a1
pyrus_communis	pycom02g10390 pycom15g21600
rosa_chinensis	RchiOBHm_Chr2g0099441 RchiOBHm_Chr6g0302811
rosa_laevigata	RLG00000016882
rosa_multiflora	Rmu_co8500929.1_g000001 Rmu_sc0002487.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165300
rosa_rugosa	Rorug06G0317400
rosa_samantha	Rh2AG129500 Rh2BG132500 Rh2CG133300 Rh2DG133600 Rh6AG430600
rosa_wichuraiana	Rw2G009970 Rw6G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AciI	CCGC	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	252
AjnI	CCWGG	3 cut(s)	96, 273, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	2 cut(s)	179, 227
AluI	AGCT	2 cut(s)	179, 227
Alw26I	GTCTC	2 cut(s)	196, 344
AoxI	GGCC	2 cut(s)	276, 332
ApeKI	GCWGC	2 cut(s)	93, 224
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	105, 236
BccI	CCATC	2 cut(s)	145, 241
BciT130I	CCWGG	3 cut(s)	98, 275, 393
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	196, 344
BisI	GCNGC	2 cut(s)	94, 225
BlsI	GCNGC	2 cut(s)	95, 226
Bme1390I	CCNGG	3 cut(s)	98, 275, 393
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	262, 279
BmrFI	CCNGG	3 cut(s)	98, 275, 393
BpmI	CTGGAG	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
BseBI	CCWGG	3 cut(s)	98, 275, 393
BseDI	CCNNGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	105, 236
BshFI	GGCC	2 cut(s)	278, 334
BsmAI	GTCTC	2 cut(s)	196, 344
BsmBI	CGTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	278, 334
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	2 cut(s)	278, 334
BspLI	GGNNCC	2 cut(s)	262, 279
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	98, 275, 393
BstACI	GRCGYC	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	196, 344
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	3 cut(s)	98, 275, 393
BstNSI	RCATGY	2 cut(s)	306, 357
BstSCI	CCNGG	3 cut(s)	96, 273, 391
BstV1I	GCAGC	2 cut(s)	105, 236
BsuRI	GGCC	2 cut(s)	278, 334
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	4 cut(s)	184, 303, 354, 417
CviJI	RGCY	8 cut(s)	96, 155, 179, 227, 263, 270, 278, 334
CviKI_1	RGCY	8 cut(s)	96, 155, 179, 227, 263, 270, 278, 334
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	96, 273, 391
EcoT38I	GRGCYC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	4 cut(s)	187, 306, 357, 420
FatI	CATG	4 cut(s)	183, 302, 353, 416
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	94, 225
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	94, 225
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	94, 225
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	278, 334
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	187, 306, 357, 420
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	148, 165
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	132, 302, 306
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	318, 345, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	187, 306, 357, 420
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	88, 260
LpnPI	CCDG	7 cut(s)	83, 110, 260, 287, 378, 387, 405
Lsp1109I	GCAGC	2 cut(s)	105, 236
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	69, 117, 120, 123
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	320, 379
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	324, 345, 399, 446
MseI	TTAA	4 cut(s)	5, 71, 432, 469
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	98, 275, 393
MunI	CAATTG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	3 cut(s)	98, 275, 393
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	187, 306, 357, 420
NlaIV	GGNNCC	2 cut(s)	262, 279
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	2 cut(s)	306, 357
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	95, 226
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	96, 273, 391
PspGI	CCWGG	3 cut(s)	96, 273, 391
PspN4I	GGNNCC	2 cut(s)	262, 279
PspPI	GGNCC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	5, 71, 432, 469
SatI	GCNGC	2 cut(s)	94, 225
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	98, 275, 393
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	5 cut(s)	181, 229, 255, 317, 438
Sse9I	AATT	2 cut(s)	320, 379
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	96, 273, 391
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	320, 379
Tru1I	TTAA	4 cut(s)	5, 71, 432, 469
Tru9I	TTAA	4 cut(s)	5, 71, 432, 469
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	93, 224
Tsp45I	GTSAC	1 cut(s)	368
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	2 cut(s)	306, 357
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.