AT4G09600

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004300
Physical Location & Seq
Reverse (-)
6072804 .. 6073646
843 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09600.1

Sequence Viewer

Length: 300 bp
ATGGCAATCTTCCGAAGTACACTAGTTTTACTGCTGATCCTCTTCTGCCTCACCACTTTTGAGCTTCATGTTCATGCTGCTGAAGATTCACAAGTCGGTGAAGGCGTAGTGAAAATTGATTGCGGTGGGAGATGCAAAGGTAGATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGTTGTTACCGCTGCAACTGTGTGCCACCAGGCACCGCCGGGAACCACCACCTTTGTCCTTGCTACGCCTCCATTACCACTCGTGGTGGCCGTCTCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005576 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

99

Amino Acids

10.7

Weight (kDa)

8.88

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 40 - 99 5.6e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 3 cut(s) 123, 202, 228
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 19
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 64, 192
AluI AGCT 2 cut(s) 64, 192
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 31
AoxI GGCC 2 cut(s) 161, 280
ApeKI GCWGC 3 cut(s) 77, 147, 204
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 43, 110
BaeGI GKGCMC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 273
BbvI GCAGC 3 cut(s) 64, 159, 191
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 78, 148, 205
BlsI GCNGC 3 cut(s) 79, 149, 206
Bme1390I CCNGG 2 cut(s) 222, 232
BmiI GGNNCC 2 cut(s) 226, 236
BmrFI CCNGG 2 cut(s) 222, 232
BmsI GCATC 2 cut(s) 122, 134
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 3 cut(s) 64, 159, 191
BshFI GGCC 2 cut(s) 163, 282
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 163, 282
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 3 cut(s) 123, 202, 228
BspANI GGCC 2 cut(s) 163, 282
BspLI GGNNCC 2 cut(s) 226, 236
BspPI GGATC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 224
BssMI GATC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 220, 230
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 64, 159, 191
BsuRI GGCC 2 cut(s) 163, 282
Cac8I GCNNGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 18
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 3 cut(s) 68, 74, 183
CviJI RGCY 4 cut(s) 64, 163, 192, 282
CviKI_1 RGCY 4 cut(s) 64, 163, 192, 282
CviQI GTAC 1 cut(s) 18
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 71, 77, 186
FaiI YATR 3 cut(s) 69, 75, 184
FatI CATG 3 cut(s) 67, 73, 182
Fnu4HI GCNGC 3 cut(s) 78, 148, 205
Fsp4HI GCNGC 3 cut(s) 78, 148, 205
FspBI CTAG 1 cut(s) 23
GluI GCNGC 3 cut(s) 78, 148, 205
HaeIII GGCC 2 cut(s) 163, 282
HapII CCGG 1 cut(s) 231
Hin1II CATG 3 cut(s) 71, 77, 186
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 43, 110
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 4 cut(s) 135, 147, 186, 207
Hsp92II CATG 3 cut(s) 71, 77, 186
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 3 cut(s) 207, 234, 244
Lsp1109I GCAGC 3 cut(s) 64, 159, 191
LweI GCATC 2 cut(s) 122, 134
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 2 cut(s) 34, 95
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 1 cut(s) 114
MnlI CCTC 4 cut(s) 50, 59, 153, 271
MseI TTAA 1 cut(s) 298
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 192, 204
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 222, 232
MvaI CCWGG 1 cut(s) 222
NciI CCSGG 1 cut(s) 232
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 71, 77, 186
NlaIV GGNNCC 2 cut(s) 226, 236
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 280
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 79, 149, 206
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 226, 236
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 3 cut(s) 78, 148, 205
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 222, 232
SduI GDGCHC 1 cut(s) 296
SetI ASST 4 cut(s) 66, 142, 194, 246
SfaNI GCATC 2 cut(s) 122, 134
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 22
SphI GCATGC 1 cut(s) 186
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 123, 202, 228
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 220, 230
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 114
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseI GCWGC 3 cut(s) 77, 147, 204
TspDTI ATGAA 2 cut(s) 56, 62
XceI RCATGY 1 cut(s) 186
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.