MD15G1246100.v1.1

Gibberellin-regulated protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004300
Physical Location & Seq
Reverse (-)
20382798 .. 20383602
805 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1246100.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGCTTTGTCATCAAGAACGCTCGTAGCTTCCATGCTTGTCTCTTTTCTGCTTCTCCAATATCTCACTAAAGCAGCTAATCATCAGTATGAGACGATAATATATCGACACATATATACCATATGTTTCTTTCAACTTTCAAATGGTATGGACGTCAATGGAGCACCAAGCCCCCAGGCCCCGACATTAGATTGTGGGGTGGCATGTGAAGGAAGGTGCAAACTATCATCGAGGCCTCGTCTCTGCAAAAGGGCATGTGGGAGTTGTTGTGACAAGTGCAATTGTGTTCCTCCAGGCACTTCTGGCAACTATGAGTCATGTCCTTGCTATTTTAACCTCAAAACCCACAATGACACCCGCAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

8.71

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 64 - 123 1.6e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AciI CCGC 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 134, 141
AjnI CCWGG 2 cut(s) 174, 292
AluBI AGCT 2 cut(s) 29, 77
AluI AGCT 2 cut(s) 29, 77
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 3 cut(s) 46, 86, 245
AoxI GGCC 2 cut(s) 177, 233
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 176, 294
BcoDI GTCTC 3 cut(s) 46, 86, 245
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 176, 294
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 176, 294
BpmI CTGGAG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
BseBI CCWGG 2 cut(s) 176, 294
BseDI CCNNGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 179, 235
BsiHKAI GWGCWC 1 cut(s) 166
BsmAI GTCTC 3 cut(s) 46, 86, 245
BsmBI CGTCTC 2 cut(s) 86, 245
BsnI GGCC 2 cut(s) 179, 235
Bsp1286I GDGCHC 1 cut(s) 166
BspACI CCGC 1 cut(s) 358
BspANI GGCC 2 cut(s) 179, 235
BspLI GGNNCC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 176, 294
BstACI GRCGYC 1 cut(s) 153
BstMAI GTCTC 3 cut(s) 46, 86, 245
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 2 cut(s) 176, 294
BstNSI RCATGY 2 cut(s) 207, 258
BstSCI CCNGG 2 cut(s) 174, 292
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 2 cut(s) 179, 235
Cfr13I GGNCC 1 cut(s) 178
CviAII CATG 4 cut(s) 34, 204, 255, 318
CviJI RGCY 6 cut(s) 5, 29, 77, 171, 179, 235
CviKI_1 RGCY 6 cut(s) 5, 29, 77, 171, 179, 235
Eco147I AGGCCT 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 174, 292
Esp3I CGTCTC 2 cut(s) 86, 245
FaeI CATG 4 cut(s) 37, 207, 258, 321
FatI CATG 4 cut(s) 33, 203, 254, 317
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 179, 235
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 4 cut(s) 37, 207, 258, 321
HinfI GANTC 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 203, 207
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 219, 246, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 4 cut(s) 37, 207, 258, 321
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 161, 188, 279, 288, 306
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 269
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 4 cut(s) 225, 246, 300, 347
MseI TTAA 2 cut(s) 333, 370
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 176, 294
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 2 cut(s) 176, 294
MwoI GCNNNNNNNGC 1 cut(s) 303
NdeI CATATG 1 cut(s) 122
NlaIII CATG 4 cut(s) 37, 207, 258, 321
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 2 cut(s) 207, 258
PceI AGGCCT 1 cut(s) 235
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 174, 292
PspGI CCWGG 2 cut(s) 174, 292
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 333, 370
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 176, 294
SduI GDGCHC 1 cut(s) 166
SetI ASST 5 cut(s) 31, 79, 156, 218, 339
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 280
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 1 cut(s) 358
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 174, 292
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 106, 230
TasI AATT 1 cut(s) 280
Tru1I TTAA 2 cut(s) 333, 370
Tru9I TTAA 2 cut(s) 333, 370
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 269
XceI RCATGY 2 cut(s) 207, 258
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.