Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002487.1

Orthogroup ID

OG0004300

Physical Location & Seq

Genomic Coordinates Forward (+)

66810 .. 67234

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002487.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgggagccttgtcgagaacgttgacggcttcactggttctctcttttctgcttctccttctggccgaagcagatcaccagactgtcatggacctcaatcacgctgcagctcccagccccttaccccccaccatagattgtggagtggcttgtaatggaaggtgcaaactatcgtcccggccacgcctgtgcaaaagggcgtgcggaagttgctgtaacaagtgcaactgtgttcctccgggcactgccggcaacttggatgcttgcccttgctacgctaatctcaccacccacaaccaaacccgcaaatgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

105

Amino Acids

11.03

Weight (kDa)

8.67

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18420 AT2G18420 AT4G09600 AT4G09610
fragaria_vesca	FvH4_1g11830 FvH4_2g38490 FvH4_2g38500 FvH4_2g38500
malus_domestica	MD00G1092400.v1.1 MD02G1132300.v1.1 MD02G1132400.v1.1 MD15G1012400.v1.1 MD15G1012600.v1.1 MD15G1246100.v1.1
prunus_persica	Prupe.1G365700_v2.0.a1 Prupe.7G168200_v2.0.a1
pyrus_communis	pycom02g10390 pycom15g21600
rosa_chinensis	RchiOBHm_Chr2g0099441 RchiOBHm_Chr6g0302811
rosa_laevigata	RLG00000016882
rosa_multiflora	Rmu_co8500929.1_g000001 Rmu_sc0002487.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165300
rosa_rugosa	Rorug06G0317400
rosa_samantha	Rh2AG129500 Rh2BG132500 Rh2CG133300 Rh2DG133600 Rh6AG430600
rosa_wichuraiana	Rw2G009970 Rw6G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	204, 304
AclI	AACGTT	1 cut(s)	20
AcoI	YGGCCR	2 cut(s)	63, 179
AleI	CACNNNNGTG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AoxI	GGCC	2 cut(s)	63, 179
ApeKI	GCWGC	2 cut(s)	104, 107
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	2 cut(s)	178, 240
AsuHPI	GGTGA	2 cut(s)	68, 277
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	91, 119
BceAI	ACGGC	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	178, 240
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme1390I	CCNGG	2 cut(s)	178, 240
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	178, 240
BmsI	GCATC	1 cut(s)	250
BpuMI	CCSGG	2 cut(s)	178, 240
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	91, 119
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	65, 181
BsiSI	CCGG	3 cut(s)	178, 239, 249
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	65, 181
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	204, 304
BspANI	GGCC	2 cut(s)	65, 181
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	85, 230
BstC8I	GCNNGC	3 cut(s)	202, 250, 265
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 249
BstSCI	CCNGG	2 cut(s)	176, 238
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	91, 119
BsuRI	GGCC	2 cut(s)	65, 181
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	32, 243
Cac8I	GCNNGC	3 cut(s)	202, 250, 265
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	8, 29, 65, 110, 117, 149, 181
CviKI_1	RGCY	7 cut(s)	8, 29, 65, 110, 117, 149, 181
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	63, 179
Eco47I	GGWCC	1 cut(s)	91
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 134
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	105, 108
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	105, 108
GluI	GCNGC	2 cut(s)	105, 108
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	65, 181
HapII	CCGG	3 cut(s)	178, 239, 249
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HpaII	CCGG	3 cut(s)	178, 239, 249
HphI	GGTGA	2 cut(s)	68, 277
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	68, 153
HpyCH4III	ACNGT	2 cut(s)	85, 230
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	107, 165, 192, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 249
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	91
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	5, 115
LpnPI	CCDG	8 cut(s)	20, 47, 92, 127, 191, 200, 252, 262
Lsp1109I	GCAGC	2 cut(s)	91, 119
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	104, 246
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	187
MspI	CCGG	3 cut(s)	178, 239, 249
MspR9I	CCNGG	2 cut(s)	178, 240
MwoI	GCNNNNNNNGC	2 cut(s)	210, 249
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	178, 240
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	7
OliI	CACNNNNGTG	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	106, 109
Psp1406I	AACGTT	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	178, 240
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	23, 96, 112, 164
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	187
SsiI	CCGC	2 cut(s)	204, 304
StyD4I	CCNGG	2 cut(s)	176, 238
TaaI	ACNGT	2 cut(s)	85, 230
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	2 cut(s)	39, 250
TseI	GCWGC	2 cut(s)	104, 107
TspRI	CASTG	2 cut(s)	39, 250
VpaK11BI	GGWCC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.